Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h04r
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 107 9e-24
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 104 8e-23
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 31 0.92
03_06_0191 - 32228642-32228949,32229028-32230567 30 1.6
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 30 1.6
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.6
01_03_0224 + 13940419-13941786 29 2.8
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 3.7
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 6.5
04_04_0387 + 24869594-24871480 28 8.6
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622... 28 8.6
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 107 bits (257), Expect = 9e-24
Identities = 65/205 (31%), Positives = 103/205 (50%)
Frame = -1
Query: 692 NKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQC 513
+K + + + ++ SN + ++A I+ HE +Y ALK H+ +L+L A +Q
Sbjct: 81 DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQI 140
Query: 512 LLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXX 333
+ M+R D A KQLK++Q I++D TLTQLA AWL++ GG I++A+ + +E
Sbjct: 141 FIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAE-KYPM 199
Query: 332 XXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYL 153
G ++EAE L +A ++ + GKP S+RYL
Sbjct: 200 TGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKP---SSRYL 256
Query: 152 AQLLDSHPQHPFVKEYKAKTDEFQR 78
+QL SHP H VK + D F+R
Sbjct: 257 SQLKLSHPDHVLVKRAVSAEDNFER 281
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 104 bits (249), Expect = 8e-23
Identities = 65/204 (31%), Positives = 101/204 (49%)
Frame = -1
Query: 689 KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 510
K + + ++ +A SN I +VA T+ HE +Y ALK ++ ++EL A +Q
Sbjct: 92 KESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQIC 151
Query: 509 LAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXX 330
L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG IQ+AH +LSE
Sbjct: 152 LQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATC 211
Query: 329 XXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLA 150
+E+AE L ++ ++ + GK ++RYL
Sbjct: 212 LILNGKALCLMHMGN-FEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKS---ASRYLN 267
Query: 149 QLLDSHPQHPFVKEYKAKTDEFQR 78
QL +HP H VK + D F R
Sbjct: 268 QLKLAHPDHMLVKRMSSAEDSFDR 291
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 182 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 54
+P EV +L+ DS P+HP +K++ + + + A+ QPS
Sbjct: 19 EPEEVE--WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQPS 59
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 656 VAKGTELSNEIFLIVAATIYYHEDNYEAALKILH----NAESLELRAFTLQCLLAMNRPD 489
V + TE+++ + + + + N++ AL +L N ES+ L+CL+ + D
Sbjct: 492 VVQDTEVASSVLTVFILALC-KQGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVD 550
Query: 488 LARKQLKLLQ 459
LA + +K ++
Sbjct: 551 LAIEHIKSIR 560
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 13 RVRITYTPCV*LATEGWYCAARRWNSSVLALYSFTKGCWGW 135
R+R+ PC +EG + AARR+ SS++ ++G GW
Sbjct: 129 RLRLIVFPCSYACSEGTFIAARRYASSMVPTSIISQGI-GW 168
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 596 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 468
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 524 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 390
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 150 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 311
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 226 PTCCSALRSPRRISGNHRR 170
PT C+ R PR G+HRR
Sbjct: 55 PTSCATARQPRHARGHHRR 73
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -1
Query: 161 RYLAQLLDSHPQ---HPFVKEYKAKTDEFQ 81
R L LL +HP HP+ KE+K K +E +
Sbjct: 403 RCLEFLLTNHPMELLHPYTKEWKVKLEEME 432
>03_02_0183 -
6225827-6226414,6226478-6226512,6227244-6227331,
6228892-6228900
Length = 239
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 217 CSALRSPRRISGNHRRCRP 161
C L SPR + HRR RP
Sbjct: 101 CCILHSPRHVGARHRRLRP 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,686
Number of Sequences: 37544
Number of extensions: 369901
Number of successful extensions: 1146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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