BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h04r (719 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g30630.1 68414.m03746 coatomer protein epsilon subunit family... 119 2e-27 At2g34840.1 68415.m04278 coatomer protein epsilon subunit family... 108 3e-24 At3g14900.1 68416.m01884 expressed protein 31 0.58 At5g56220.1 68418.m07016 expressed protein 30 1.8 At2g40130.2 68415.m04936 heat shock protein-related contains sim... 28 5.4 At2g40130.1 68415.m04935 heat shock protein-related contains sim... 28 5.4 At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 28 5.4 At5g61040.1 68418.m07660 expressed protein 28 7.2 At5g54840.1 68418.m06830 GTP-binding family protein similar to S... 27 9.5 At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 27 9.5 At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 27 9.5 >At1g30630.1 68414.m03746 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus; ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this gene Length = 292 Score = 119 bits (286), Expect = 2e-27 Identities = 73/214 (34%), Positives = 108/214 (50%) Frame = -1 Query: 719 LVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESL 540 L YL NK + ++ + +A T +N I ++A TI+ HE++Y ALK H+ ++ Sbjct: 77 LAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTM 136 Query: 539 ELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVM 360 +L A +Q + M+R D A KQL+++Q I++D TLTQLA AWLNL GG IQ+A+ Sbjct: 137 DLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQ 196 Query: 359 ELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGK 180 + SE +EEAE L +A ++ + GK Sbjct: 197 DFSEKYPMTSLILNGKAVCCMHMGN-FEEAETLLLEALNKDAKDPETLANLVVCSLHVGK 255 Query: 179 PPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 78 S+RYL QL SHP+H VK + D F+R Sbjct: 256 S---SSRYLNQLKLSHPEHVLVKRAASAEDNFER 286 >At2g34840.1 68415.m04278 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus Length = 293 Score = 108 bits (260), Expect = 3e-24 Identities = 67/214 (31%), Positives = 106/214 (49%) Frame = -1 Query: 719 LVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESL 540 L YL NK + ++ + +A T +N+ ++A I+ HE++Y LK H ++ Sbjct: 78 LAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTM 137 Query: 539 ELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVM 360 +L A +Q + M+R + A KQL+++Q I++D TLTQLA AWLNL GG IQ+A+ Sbjct: 138 DLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFE 197 Query: 359 ELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGK 180 + SE ++EAE L +A ++ + GK Sbjct: 198 DFSEKYPMTCLILNGKAVCCMQMGN-FDEAETLLLEALNKDAKDPETLANLVVCSLHVGK 256 Query: 179 PPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 78 S+R+L+QL SHP+H VK + D F+R Sbjct: 257 S---SSRHLSQLKLSHPEHILVKRVSSAEDNFER 287 >At3g14900.1 68416.m01884 expressed protein Length = 611 Score = 31.5 bits (68), Expect = 0.58 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = -1 Query: 173 EVSARYLAQLLDSHPQ---HPFVKEYKAKTDEFQ 81 E +R L LL +HP HP+ KE+KAK +E + Sbjct: 374 EKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEME 407 >At5g56220.1 68418.m07016 expressed protein Length = 973 Score = 29.9 bits (64), Expect = 1.8 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +2 Query: 314 ERPDQVPVNRG--VQITPSRCS-VRLGYQGRPE--LDSAMLVLAASKCRH-LQCPAATSV 475 E D VP G + + RCS R P +S +L KCR+ C ++TSV Sbjct: 382 EESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSV 441 Query: 476 VCVQGL 493 VCV G+ Sbjct: 442 VCVNGV 447 >At2g40130.2 68415.m04936 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 Length = 910 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +3 Query: 444 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 620 ++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+ Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393 Query: 621 EYFIGQFRTF 650 IG F F Sbjct: 394 SSLIGSFVPF 403 >At2g40130.1 68415.m04935 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 Length = 491 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +3 Query: 444 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 620 ++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+ Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393 Query: 621 EYFIGQFRTF 650 IG F F Sbjct: 394 SSLIGSFVPF 403 >At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|P79263 Inter-alpha-trypsin inhibitor heavy chain H4 precursor {Sus scrofa}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain Length = 641 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +2 Query: 317 RPDQVPVNRGVQITPSRCSVRLGYQGRPELDSAMLVLAASKCRHLQC 457 RP P + G++ + RC++ L Y+ R E A+ S H C Sbjct: 52 RPGSTPSSSGLRFSKGRCAICL-YEIRKEDGKAIFTAECSHSFHFDC 97 >At5g61040.1 68418.m07660 expressed protein Length = 590 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 301 LQLPEVCGKRLNSN*QTQRPAPHSTPTCCSALRSPRRIS 185 L+ V GKRL+ Q P+ +STP + SPR +S Sbjct: 348 LRADRVKGKRLDETESNQDPSGNSTPESGNYAVSPRELS 386 >At5g54840.1 68418.m06830 GTP-binding family protein similar to SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase spg1)(Sid3 protein) {Schizosaccharomyces pombe} Length = 288 Score = 27.5 bits (58), Expect = 9.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 58 GWYCAARRWNSSVLALYSFTK 120 GWY AR+WN + + + TK Sbjct: 194 GWYSQARKWNKTAIPILIGTK 214 >At4g21550.1 68417.m03113 transcriptional factor B3 family protein low similarity to SP|Q01593 Abscisic acid-insensitive protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous protein homolog {Oryza sativa}; contains Pfam profile PF02362: B3 DNA binding domain Length = 721 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -2 Query: 322 RPLSVLGLQLPEVCGKRLNSN*QTQRPAPHSTPTCCSALRSPRRISGNHRRC 167 +P V G EV G ++ T+ P TC ++SP I H RC Sbjct: 536 KPTDVAGSTCTEVEGLLISPT-TTKHPRHRDGCTCIICIQSPSGIGPKHDRC 586 >At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein contains Pfam domain PF02141: DENN (AEX-3) domain Length = 976 Score = 27.5 bits (58), Expect = 9.5 Identities = 11/48 (22%), Positives = 25/48 (52%) Frame = -1 Query: 527 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 384 F+ +C ++ + +Q+K++ + DD TL + ++Q PG+ Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,105,562 Number of Sequences: 28952 Number of extensions: 268219 Number of successful extensions: 694 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 692 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1565336320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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