Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h04r
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...   119   2e-27
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...   108   3e-24
At3g14900.1 68416.m01884 expressed protein                             31   0.58 
At5g56220.1 68418.m07016 expressed protein                             30   1.8  
At2g40130.2 68415.m04936 heat shock protein-related contains sim...    28   5.4  
At2g40130.1 68415.m04935 heat shock protein-related contains sim...    28   5.4  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    28   5.4  
At5g61040.1 68418.m07660 expressed protein                             28   7.2  
At5g54840.1 68418.m06830 GTP-binding family protein similar to S...    27   9.5  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   9.5  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   9.5  

>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score =  119 bits (286), Expect = 2e-27
 Identities = 73/214 (34%), Positives = 108/214 (50%)
 Frame = -1

Query: 719 LVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESL 540
           L  YL    NK + ++ +   +A  T  +N I  ++A TI+ HE++Y  ALK  H+  ++
Sbjct: 77  LAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTM 136

Query: 539 ELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVM 360
           +L A  +Q  + M+R D A KQL+++Q I++D TLTQLA AWLNL  GG  IQ+A+    
Sbjct: 137 DLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQ 196

Query: 359 ELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGK 180
           + SE                      +EEAE  L +A ++  +               GK
Sbjct: 197 DFSEKYPMTSLILNGKAVCCMHMGN-FEEAETLLLEALNKDAKDPETLANLVVCSLHVGK 255

Query: 179 PPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 78
               S+RYL QL  SHP+H  VK   +  D F+R
Sbjct: 256 S---SSRYLNQLKLSHPEHVLVKRAASAEDNFER 286


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score =  108 bits (260), Expect = 3e-24
 Identities = 67/214 (31%), Positives = 106/214 (49%)
 Frame = -1

Query: 719 LVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESL 540
           L  YL    NK + ++ +   +A  T  +N+   ++A  I+ HE++Y   LK  H   ++
Sbjct: 78  LAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTM 137

Query: 539 ELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVM 360
           +L A  +Q  + M+R + A KQL+++Q I++D TLTQLA AWLNL  GG  IQ+A+    
Sbjct: 138 DLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFE 197

Query: 359 ELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXGK 180
           + SE                      ++EAE  L +A ++  +               GK
Sbjct: 198 DFSEKYPMTCLILNGKAVCCMQMGN-FDEAETLLLEALNKDAKDPETLANLVVCSLHVGK 256

Query: 179 PPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 78
               S+R+L+QL  SHP+H  VK   +  D F+R
Sbjct: 257 S---SSRHLSQLKLSHPEHILVKRVSSAEDNFER 287


>At3g14900.1 68416.m01884 expressed protein
          Length = 611

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 173 EVSARYLAQLLDSHPQ---HPFVKEYKAKTDEFQ 81
           E  +R L  LL +HP    HP+ KE+KAK +E +
Sbjct: 374 EKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEME 407


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +2

Query: 314 ERPDQVPVNRG--VQITPSRCS-VRLGYQGRPE--LDSAMLVLAASKCRH-LQCPAATSV 475
           E  D VP   G  + +   RCS  R      P    +S   +L   KCR+   C ++TSV
Sbjct: 382 EESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSV 441

Query: 476 VCVQGL 493
           VCV G+
Sbjct: 442 VCVNGV 447


>At2g40130.2 68415.m04936 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 910

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 444 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 620
           ++  + + L+    +VW I +  + E      +RF ++ KD+    + I  +  C  HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393

Query: 621 EYFIGQFRTF 650
              IG F  F
Sbjct: 394 SSLIGSFVPF 403


>At2g40130.1 68415.m04935 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 491

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 444 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 620
           ++  + + L+    +VW I +  + E      +RF ++ KD+    + I  +  C  HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393

Query: 621 EYFIGQFRTF 650
              IG F  F
Sbjct: 394 SSLIGSFVPF 403


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 317 RPDQVPVNRGVQITPSRCSVRLGYQGRPELDSAMLVLAASKCRHLQC 457
           RP   P + G++ +  RC++ L Y+ R E   A+     S   H  C
Sbjct: 52  RPGSTPSSSGLRFSKGRCAICL-YEIRKEDGKAIFTAECSHSFHFDC 97


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 301 LQLPEVCGKRLNSN*QTQRPAPHSTPTCCSALRSPRRIS 185
           L+   V GKRL+     Q P+ +STP   +   SPR +S
Sbjct: 348 LRADRVKGKRLDETESNQDPSGNSTPESGNYAVSPRELS 386


>At5g54840.1 68418.m06830 GTP-binding family protein similar to
           SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase
           spg1)(Sid3 protein) {Schizosaccharomyces pombe}
          Length = 288

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 58  GWYCAARRWNSSVLALYSFTK 120
           GWY  AR+WN + + +   TK
Sbjct: 194 GWYSQARKWNKTAIPILIGTK 214


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 322 RPLSVLGLQLPEVCGKRLNSN*QTQRPAPHSTPTCCSALRSPRRISGNHRRC 167
           +P  V G    EV G  ++    T+ P      TC   ++SP  I   H RC
Sbjct: 536 KPTDVAGSTCTEVEGLLISPT-TTKHPRHRDGCTCIICIQSPSGIGPKHDRC 586


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -1

Query: 527 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 384
           F+ +C ++ +      +Q+K++  + DD TL  +      ++Q  PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,562
Number of Sequences: 28952
Number of extensions: 268219
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)