Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h04f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    45   8e-06
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   2.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.8  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.0  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   5.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.6  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.7  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
 Frame = +1

Query: 37  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 216
           +EL+ V+  FY GNY +   E  + S S   + L  + ++ R+ +A G      Q + T 
Sbjct: 10  NELYFVRQYFYSGNYTKLF-EIDTTSMSEKGLELT-EIYMARAKLALGESLESIQSILTQ 67

Query: 217 DPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAAL 396
                P  + +  L  + N   I+         G   S+ +   + A       +++ A+
Sbjct: 68  KT---PGSAAILALAGEGNMELIIDQ------HGN--SDSVVQTLGAIFQIKNGSFDDAM 116

Query: 397 KILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG- 570
            +L  + E+LE  A  +   L  ++ + A + LK   D  D+  + QLAQ+W+ ++ GG 
Sbjct: 117 DLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGV 176

Query: 571 PGIQDAHYSVMELS 612
               DA Y   EL+
Sbjct: 177 ESYNDAFYVFEELN 190


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 388 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 528
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 79  YQQAINEAQSVSPSTPLVALQRD-AFLYRSYI-AQGNYRIVQQELKTADPMLQPLKSLVD 252
           Y  +  ++   S +T    L      LYR+    +G+Y IVQ+  ++A+P+       + 
Sbjct: 635 YSPSHKDSNKTSRNTSKEGLPSSPTMLYRTTSNTRGDY-IVQRTQQSANPLTNIEPQDMS 693

Query: 253 YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 363
            L  D N S +VAD    +   T  ++ +   +A+ +
Sbjct: 694 NLSTDINASDVVADSTNSILYPTSTASSVANTIASDV 730


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 317 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 409
           +R CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 361 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 537
           ++++   Y+  L +  N  S++    T + LL  N   L+ K LKL ++I+D  TL QL
Sbjct: 381 VHWNSTVYQELLNLKSNNSSVD-GVKTRRQLLEENAL-LSHKVLKLTEEIQDLETLNQL 437


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +1

Query: 256 LLPDANKSA--IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLEL 429
           L  DA K+A  IV  + ++   G +         +AT+Y+       A+ + H A +L +
Sbjct: 166 LQKDATKAADLIVKALLSKQFNGDDEQKSRLFEQSATLYFQAGTPSYAVPLYHEALNLTM 225

Query: 430 RAFTLQCLLAMNRPDLARKQLKLLQ--DIEDDGTLTQLAQAW 549
              +   L+ MN  +LA   L   +  D +   TL + +Q+W
Sbjct: 226 ANPSCHGLILMN--NLATSLLAQTETVDKKHHETLMKQSQSW 265


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 175 QGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAI 285
           Q  Y++    ++     L+P+K  +DYL+  AN+  I
Sbjct: 749 QSTYKVEMHHVRQMKN-LKPIKGTLDYLMAKANRKQI 784


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 LIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 453
           LI+    Y H   Y + ++ILHN E  +L  F  +CL
Sbjct: 214 LIMKQFSYSHHMGYISEIRILHN-EYEKLLKFVRECL 249


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 136 LQRDAFLYRSYIAQGNYRIVQQELKTA 216
           ++R AFLY  ++   ++ ++ QEL+ A
Sbjct: 346 IKRVAFLYHKFMIPSDHVVISQELQDA 372


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 559  LDSAMLVLAASKCRHLQCPAATSVVCVQG 473
            LD  M+ + +S    LQC +ATSVV  +G
Sbjct: 1353 LDVGMMRVLSSDQLPLQCGSATSVVVSEG 1381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,614
Number of Sequences: 5004
Number of extensions: 44222
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)