Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h04f
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   9.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 451 LLAMNRPDLARKQLKLLQDIEDD 519
           +L M   DL +KQLK L+D E++
Sbjct: 365 ILRMLIIDLRKKQLKSLEDWENE 387


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 400 FLMQLHNYLHDSKLLQPQSRI 338
           +  Q   Y+HD+  +QPQ ++
Sbjct: 458 YTQQQFPYVHDTLQIQPQEQL 478


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 3   SCQNGTSSARC**TFRCKKCI 65
           SC N  SS +C  +F   KC+
Sbjct: 112 SCSNVDSSDKCEKSFMFMKCM 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,110
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)