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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h04f
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...   149   1e-36
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...   147   6e-36
At5g54540.1 68418.m06790 expressed protein                             30   1.1  
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa...    30   1.4  
At2g40130.2 68415.m04936 heat shock protein-related contains sim...    28   4.3  
At2g40130.1 68415.m04935 heat shock protein-related contains sim...    28   4.3  
At5g56220.1 68418.m07016 expressed protein                             28   5.7  
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ...    27   7.5  
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ...    27   7.5  
At3g29075.1 68416.m03637 glycine-rich protein                          27   7.5  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    27   7.5  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   7.5  
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil...    27   9.9  
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil...    27   9.9  
At3g45010.1 68416.m04849 serine carboxypeptidase III, putative s...    27   9.9  

>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score =  149 bits (362), Expect = 1e-36
 Identities = 77/194 (39%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
 Frame = +1

Query: 37  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213
           D LF+++N FY+G YQ AIN ++  + S   + ++RD  ++R+YIA G+Y++V  E+ + 
Sbjct: 8   DHLFNLRNHFYLGAYQAAINNSEIPNLSQEDI-VERDCLVHRAYIALGSYQLVISEIDEA 66

Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393
           A   LQ +K L  YL    NK + ++ +   +A  T  +N I  ++A TI+ HE++Y  A
Sbjct: 67  AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126

Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
           LK  H+  +++L A  +Q  + M+R D A KQL+++Q I++D TLTQLA AWLNL  GG 
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186

Query: 574 GIQDAHYSVMELSE 615
            IQ+A+    + SE
Sbjct: 187 KIQEAYLIFQDFSE 200


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score =  147 bits (356), Expect = 6e-36
 Identities = 75/194 (38%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
 Frame = +1

Query: 37  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213
           D LF+++N FY+G YQ AIN ++ ++  +P  A++RD  ++RSYIA G+Y++V  E+ ++
Sbjct: 9   DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67

Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393
           A   LQ +K L  YL    NK + ++ +   +A  T  +N+   ++A  I+ HE++Y   
Sbjct: 68  AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127

Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
           LK  H   +++L A  +Q  + M+R + A KQL+++Q I++D TLTQLA AWLNL  GG 
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187

Query: 574 GIQDAHYSVMELSE 615
            IQ+A+    + SE
Sbjct: 188 KIQEAYLIFEDFSE 201


>At5g54540.1 68418.m06790 expressed protein
          Length = 297

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +1

Query: 94  NEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDAN 273
           +E ++V  + P VALQ  AFL  +  AQ     +  + K  D +++  K L+ +L    N
Sbjct: 142 SENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDPKVWDAVMEN-KDLMKFL--QTN 198

Query: 274 KSAIVADIDA 303
           K+A+ + +++
Sbjct: 199 KTAVSSQVES 208


>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
          Length = 531

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 73  GNYQQAINEAQSVSP-STPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLV 249
           GN +   N +   SP  TP   L  DAF  R  +  G   +   ++     +L+PL+ L 
Sbjct: 322 GNIKSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLS 381

Query: 250 D 252
           D
Sbjct: 382 D 382


>At2g40130.2 68415.m04936 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 910

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343
           ++  + + L+    +VW I +  + E      +RF ++ KD+    + I  +  C  HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393

Query: 342 EYFIGQFRTF 313
              IG F  F
Sbjct: 394 SSLIGSFVPF 403


>At2g40130.1 68415.m04935 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 491

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343
           ++  + + L+    +VW I +  + E      +RF ++ KD+    + I  +  C  HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393

Query: 342 EYFIGQFRTF 313
              IG F  F
Sbjct: 394 SSLIGSFVPF 403


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 556 DSAMLVLAASKCRH-LQCPAATSVVCVQGL 470
           +S   +L   KCR+   C ++TSVVCV G+
Sbjct: 418 NSLKRLLKTKKCRNNSNCKSSTSVVCVNGV 447


>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1072

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698


>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1069

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 31  DVDELFDVKNAFYVGNYQQAINEAQSVSPST----PLVALQRDAFLYR 162
           DVD+  +     Y G Y   +   +S+ PS     PL +L  DAF Y+
Sbjct: 10  DVDDFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLSSLSGDAFEYQ 57


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 639 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 693


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +1

Query: 436 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 579
           F+ +C ++ +      +Q+K++  + DD TL  +      ++Q  PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493


>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 974

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
 Frame = +1

Query: 226 LQPLKSLVDYLLPDANKSAIVADIDARVAK----GTELSNEIFLIVAATIYYHEDNYEAA 393
           L PLK   D L+    K   + D  + + +    G  L N  + ++   +     N +AA
Sbjct: 273 LVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGR-NADAA 331

Query: 394 LKILHNAES--LELRAFTLQCLLA-MNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQ 564
             ++H   S  + ++ +   C +  M++  +  K   L   +   G + Q AQA+ +LI+
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQ-AQAYASLIE 390

Query: 565 G 567
           G
Sbjct: 391 G 391


>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 391

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417
           KG  + +++FL V   T+YYH+ +Y + +K  H A+
Sbjct: 55  KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 88


>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 450

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417
           KG  + +++FL V   T+YYH+ +Y + +K  H A+
Sbjct: 114 KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 147


>At3g45010.1 68416.m04849 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 510

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 322 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLE-LRAFTLQCLLAMNRPDLARKQLK 495
           E S +   + AAT+ +H DN EA L  + N  SL  L+      ++ M++P  A + L+
Sbjct: 437 EWSGQKEFVAAATVPFHVDNKEAGL--MKNYGSLTFLKVHDAGHMVPMDQPKAALQMLQ 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,801
Number of Sequences: 28952
Number of extensions: 226100
Number of successful extensions: 522
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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