Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h04f
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30630.1 68414.m03746 coatomer protein epsilon subunit family... 149 1e-36
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family... 147 6e-36
At5g54540.1 68418.m06790 expressed protein 30 1.1
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 30 1.4
At2g40130.2 68415.m04936 heat shock protein-related contains sim... 28 4.3
At2g40130.1 68415.m04935 heat shock protein-related contains sim... 28 4.3
At5g56220.1 68418.m07016 expressed protein 28 5.7
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 7.5
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 7.5
At3g29075.1 68416.m03637 glycine-rich protein 27 7.5
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 27 7.5
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 27 7.5
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 9.9
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 27 9.9
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 27 9.9
At3g45010.1 68416.m04849 serine carboxypeptidase III, putative s... 27 9.9
>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
protein / COPE family protein similar to SP|O14579
Coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP) from Homo sapiens, SP|Q60445 from
Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
gb|T21160, gb|T14119 and AI100483 come from this gene
Length = 292
Score = 149 bits (362), Expect = 1e-36
Identities = 77/194 (39%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Frame = +1
Query: 37 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213
D LF+++N FY+G YQ AIN ++ + S + ++RD ++R+YIA G+Y++V E+ +
Sbjct: 8 DHLFNLRNHFYLGAYQAAINNSEIPNLSQEDI-VERDCLVHRAYIALGSYQLVISEIDEA 66
Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393
A LQ +K L YL NK + ++ + +A T +N I ++A TI+ HE++Y A
Sbjct: 67 AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126
Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
LK H+ +++L A +Q + M+R D A KQL+++Q I++D TLTQLA AWLNL GG
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186
Query: 574 GIQDAHYSVMELSE 615
IQ+A+ + SE
Sbjct: 187 KIQEAYLIFQDFSE 200
>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
protein / COPE family protein similar to SP|O14579
Coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP) from Homo sapiens, SP|Q60445 from
Cricetulus griseus
Length = 293
Score = 147 bits (356), Expect = 6e-36
Identities = 75/194 (38%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Frame = +1
Query: 37 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213
D LF+++N FY+G YQ AIN ++ ++ +P A++RD ++RSYIA G+Y++V E+ ++
Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67
Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393
A LQ +K L YL NK + ++ + +A T +N+ ++A I+ HE++Y
Sbjct: 68 AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127
Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
LK H +++L A +Q + M+R + A KQL+++Q I++D TLTQLA AWLNL GG
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187
Query: 574 GIQDAHYSVMELSE 615
IQ+A+ + SE
Sbjct: 188 KIQEAYLIFEDFSE 201
>At5g54540.1 68418.m06790 expressed protein
Length = 297
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +1
Query: 94 NEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDAN 273
+E ++V + P VALQ AFL + AQ + + K D +++ K L+ +L N
Sbjct: 142 SENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDPKVWDAVMEN-KDLMKFL--QTN 198
Query: 274 KSAIVADIDA 303
K+A+ + +++
Sbjct: 199 KTAVSSQVES 208
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 73 GNYQQAINEAQSVSP-STPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLV 249
GN + N + SP TP L DAF R + G + ++ +L+PL+ L
Sbjct: 322 GNIKSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLS 381
Query: 250 D 252
D
Sbjct: 382 D 382
>At2g40130.2 68415.m04936 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 910
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343
++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393
Query: 342 EYFIGQFRTF 313
IG F F
Sbjct: 394 SSLIGSFVPF 403
>At2g40130.1 68415.m04935 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 491
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343
++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393
Query: 342 EYFIGQFRTF 313
IG F F
Sbjct: 394 SSLIGSFVPF 403
>At5g56220.1 68418.m07016 expressed protein
Length = 973
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 556 DSAMLVLAASKCRH-LQCPAATSVVCVQGL 470
+S +L KCR+ C ++TSVVCV G+
Sbjct: 418 NSLKRLLKTKKCRNNSNCKSSTSVVCVNGV 447
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 31 DVDELFDVKNAFYVGNYQQAINEAQSVSPST----PLVALQRDAFLYR 162
DVD+ + Y G Y + +S+ PS PL +L DAF Y+
Sbjct: 10 DVDDFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLSSLSGDAFEYQ 57
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 639 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 693
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +1
Query: 436 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 579
F+ +C ++ + +Q+K++ + DD TL + ++Q PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 27.1 bits (57), Expect = 9.9
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +1
Query: 226 LQPLKSLVDYLLPDANKSAIVADIDARVAK----GTELSNEIFLIVAATIYYHEDNYEAA 393
L PLK D L+ K + D + + + G L N + ++ + N +AA
Sbjct: 273 LVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGR-NADAA 331
Query: 394 LKILHNAES--LELRAFTLQCLLA-MNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQ 564
++H S + ++ + C + M++ + K L + G + Q AQA+ +LI+
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQ-AQAYASLIE 390
Query: 565 G 567
G
Sbjct: 391 G 391
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417
KG + +++FL V T+YYH+ +Y + +K H A+
Sbjct: 55 KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 88
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417
KG + +++FL V T+YYH+ +Y + +K H A+
Sbjct: 114 KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 147
>At3g45010.1 68416.m04849 serine carboxypeptidase III, putative
similar to serine carboxypeptidase III from Oryza sativa
SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
vulgare SP|P21529, Triticum aestivum SP|P11515; contains
Pfam profile PF0450 serine carboxypeptidase
Length = 510
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 322 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLE-LRAFTLQCLLAMNRPDLARKQLK 495
E S + + AAT+ +H DN EA L + N SL L+ ++ M++P A + L+
Sbjct: 437 EWSGQKEFVAAATVPFHVDNKEAGL--MKNYGSLTFLKVHDAGHMVPMDQPKAALQMLQ 493
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,801
Number of Sequences: 28952
Number of extensions: 226100
Number of successful extensions: 522
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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