BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h04f (615 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g30630.1 68414.m03746 coatomer protein epsilon subunit family... 149 1e-36 At2g34840.1 68415.m04278 coatomer protein epsilon subunit family... 147 6e-36 At5g54540.1 68418.m06790 expressed protein 30 1.1 At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 30 1.4 At2g40130.2 68415.m04936 heat shock protein-related contains sim... 28 4.3 At2g40130.1 68415.m04935 heat shock protein-related contains sim... 28 4.3 At5g56220.1 68418.m07016 expressed protein 28 5.7 At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 7.5 At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 7.5 At3g29075.1 68416.m03637 glycine-rich protein 27 7.5 At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 27 7.5 At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 27 7.5 At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 9.9 At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 27 9.9 At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 27 9.9 At3g45010.1 68416.m04849 serine carboxypeptidase III, putative s... 27 9.9 >At1g30630.1 68414.m03746 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus; ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this gene Length = 292 Score = 149 bits (362), Expect = 1e-36 Identities = 77/194 (39%), Positives = 122/194 (62%), Gaps = 1/194 (0%) Frame = +1 Query: 37 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213 D LF+++N FY+G YQ AIN ++ + S + ++RD ++R+YIA G+Y++V E+ + Sbjct: 8 DHLFNLRNHFYLGAYQAAINNSEIPNLSQEDI-VERDCLVHRAYIALGSYQLVISEIDEA 66 Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393 A LQ +K L YL NK + ++ + +A T +N I ++A TI+ HE++Y A Sbjct: 67 AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126 Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573 LK H+ +++L A +Q + M+R D A KQL+++Q I++D TLTQLA AWLNL GG Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186 Query: 574 GIQDAHYSVMELSE 615 IQ+A+ + SE Sbjct: 187 KIQEAYLIFQDFSE 200 >At2g34840.1 68415.m04278 coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus Length = 293 Score = 147 bits (356), Expect = 6e-36 Identities = 75/194 (38%), Positives = 122/194 (62%), Gaps = 1/194 (0%) Frame = +1 Query: 37 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213 D LF+++N FY+G YQ AIN ++ ++ +P A++RD ++RSYIA G+Y++V E+ ++ Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67 Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393 A LQ +K L YL NK + ++ + +A T +N+ ++A I+ HE++Y Sbjct: 68 AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127 Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573 LK H +++L A +Q + M+R + A KQL+++Q I++D TLTQLA AWLNL GG Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187 Query: 574 GIQDAHYSVMELSE 615 IQ+A+ + SE Sbjct: 188 KIQEAYLIFEDFSE 201 >At5g54540.1 68418.m06790 expressed protein Length = 297 Score = 30.3 bits (65), Expect = 1.1 Identities = 20/70 (28%), Positives = 38/70 (54%) Frame = +1 Query: 94 NEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDAN 273 +E ++V + P VALQ AFL + AQ + + K D +++ K L+ +L N Sbjct: 142 SENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDPKVWDAVMEN-KDLMKFL--QTN 198 Query: 274 KSAIVADIDA 303 K+A+ + +++ Sbjct: 199 KTAVSSQVES 208 >At1g58440.1 68414.m06648 squalene monooxygenase, putative / squalene epoxidase, putative similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 Length = 531 Score = 29.9 bits (64), Expect = 1.4 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +1 Query: 73 GNYQQAINEAQSVSP-STPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLV 249 GN + N + SP TP L DAF R + G + ++ +L+PL+ L Sbjct: 322 GNIKSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLS 381 Query: 250 D 252 D Sbjct: 382 D 382 >At2g40130.2 68415.m04936 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 Length = 910 Score = 28.3 bits (60), Expect = 4.3 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343 ++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+ Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393 Query: 342 EYFIGQFRTF 313 IG F F Sbjct: 394 SSLIGSFVPF 403 >At2g40130.1 68415.m04935 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 Length = 491 Score = 28.3 bits (60), Expect = 4.3 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 519 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 343 ++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+ Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393 Query: 342 EYFIGQFRTF 313 IG F F Sbjct: 394 SSLIGSFVPF 403 >At5g56220.1 68418.m07016 expressed protein Length = 973 Score = 27.9 bits (59), Expect = 5.7 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 556 DSAMLVLAASKCRH-LQCPAATSVVCVQGL 470 +S +L KCR+ C ++TSVVCV G+ Sbjct: 418 NSLKRLLKTKKCRNNSNCKSSTSVVCVNGV 447 >At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00249: Myb-like DNA-binding domain Length = 1072 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339 I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+ Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698 >At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00249: Myb-like DNA-binding domain Length = 1069 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339 I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+ Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698 >At3g29075.1 68416.m03637 glycine-rich protein Length = 294 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +1 Query: 31 DVDELFDVKNAFYVGNYQQAINEAQSVSPST----PLVALQRDAFLYR 162 DVD+ + Y G Y + +S+ PS PL +L DAF Y+ Sbjct: 10 DVDDFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLSSLSGDAFEYQ 57 >At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00249: Myb-like DNA-binding domain Length = 1055 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 169 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 339 I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+ Sbjct: 639 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 693 >At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein contains Pfam domain PF02141: DENN (AEX-3) domain Length = 976 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/48 (22%), Positives = 25/48 (52%) Frame = +1 Query: 436 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 579 F+ +C ++ + +Q+K++ + DD TL + ++Q PG+ Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493 >At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 974 Score = 27.1 bits (57), Expect = 9.9 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%) Frame = +1 Query: 226 LQPLKSLVDYLLPDANKSAIVADIDARVAK----GTELSNEIFLIVAATIYYHEDNYEAA 393 L PLK D L+ K + D + + + G L N + ++ + N +AA Sbjct: 273 LVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGR-NADAA 331 Query: 394 LKILHNAES--LELRAFTLQCLLA-MNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQ 564 ++H S + ++ + C + M++ + K L + G + Q AQA+ +LI+ Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQ-AQAYASLIE 390 Query: 565 G 567 G Sbjct: 391 G 391 >At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 391 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417 KG + +++FL V T+YYH+ +Y + +K H A+ Sbjct: 55 KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 88 >At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 450 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 313 KGTELSNEIFLIV-AATIYYHEDNYEAALKILHNAE 417 KG + +++FL V T+YYH+ +Y + +K H A+ Sbjct: 114 KGYFVLSDVFLFVDEGTVYYHQPSYLSEIK--HEAQ 147 >At3g45010.1 68416.m04849 serine carboxypeptidase III, putative similar to serine carboxypeptidase III from Oryza sativa SP|P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP|P21529, Triticum aestivum SP|P11515; contains Pfam profile PF0450 serine carboxypeptidase Length = 510 Score = 27.1 bits (57), Expect = 9.9 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +1 Query: 322 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLE-LRAFTLQCLLAMNRPDLARKQLK 495 E S + + AAT+ +H DN EA L + N SL L+ ++ M++P A + L+ Sbjct: 437 EWSGQKEFVAAATVPFHVDNKEAGL--MKNYGSLTFLKVHDAGHMVPMDQPKAALQMLQ 493 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,234,801 Number of Sequences: 28952 Number of extensions: 226100 Number of successful extensions: 522 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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