Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h02r
(308 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14) 28 1.3
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4) 27 3.1
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 5.4
SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42) 26 7.2
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29) 26 7.2
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21) 26 7.2
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_16996| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
Length = 337
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 51 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 155
L L+ + A+ V W +L FLPP++ + D HN++
Sbjct: 128 LQLAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 308 WSRFQSVPCKVFHHNHCRF 252
+ RF S+ C +FH NH F
Sbjct: 510 FERFLSITCPIFHRNHVTF 528
>SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4)
Length = 277
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 230 HFAMTKNSNSQGSNTSAANAIALGAMT 150
H TK SNS S T+A NA+ A+T
Sbjct: 249 HRDTTKGSNSSLSKTTALNAVKFAAIT 275
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 18 RTKLFFRCTMVLLLSSPIRALSSVRWGNLPFLPPSKEKC 134
RTKLF T L SPI+ L+S G L F P K C
Sbjct: 684 RTKLFIYGTWALASISPIQYLAS---GELYFFNPGKLFC 719
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 136 EHFSLLGGKKGRFPHRTELKARIGEDSSRTIVQR-KNNFVRK 14
+H++++G R HR LKA++G R VQR N VR+
Sbjct: 3098 KHYTIVGCFNDR--HRRALKAKLGYFRGRNAVQRCYNEAVRR 3137
>SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 63 SPIRALSSVRWGNL----PFLPPSKEKCSDRHNRHRA 161
+PI ++ R GNL P L ++ C RH R+RA
Sbjct: 325 APIAPRTTERLGNLWCEAPALQSDRKTCGVRHRRYRA 361
>SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42)
Length = 417
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 94 GGTSLSCHQVKRNVPTATTV---IAPSAIA--LAADVLLPCELEFLVIAKWQF 237
GG L C RN TT + AI+ LAA + +P L +V +W F
Sbjct: 28 GGNLLVCVASYRNPRLRTTTNLYVIALAISDILAASITMPLTLAAIVTGRWSF 80
>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
Length = 445
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 93 WGNLPFLPPSKEKC-SDRHNRH 155
WG+LPF + C S+RH H
Sbjct: 213 WGDLPFCDQNNRSCGSNRHLNH 234
>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
Length = 1332
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 151 RLWRSEHFSLLGGKKGRFPHRTELKARIGE 62
+LW F + G KKG FP+ ++ R+ +
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNK 1109
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 185 SAANAIALGAMTVVAVGTFLFTWWQEREVPPP 90
+A AI + ++++A T F WW+ ++ P
Sbjct: 464 AAIVAIVVYILSLIAFSTSAFIWWENKDPMDP 495
>SB_16996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 30 FFRCTMVLLLSSPIRALSSVRWG 98
FFR + LLL P+RA+S+ G
Sbjct: 31 FFRAYLPLLLLRPVRAISAAEAG 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,400
Number of Sequences: 59808
Number of extensions: 203824
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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