Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h02r
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine r... 26 6.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 8.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 8.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 8.1
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 25 8.1
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 8.1
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 25 8.1
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 25 8.1
>AF024503-16|AAG24086.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein23 protein.
Length = 287
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 218 SSQNGNLFVATKNDNDCDGTLCTVQI 295
SS NG+ + TKN C+ T+C + +
Sbjct: 33 SSMNGSFGIITKNHAICNLTMCLLYV 58
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
protein C35A5.8 protein.
Length = 1078
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 293 SVPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMT--VVAVGTFLF 123
++ C+ + N C+ + HF N GS A AIA G + + +GT +F
Sbjct: 450 AIICRCEYENTCKL----LTQHFDQNANIWMNGSENDANTAIAEGRLVWLITLIGTAVF 504
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 234 IYLWQRKTTMIVMEHFARY 290
IYLWQ ++++ + AR+
Sbjct: 99 IYLWQTSNALLILRYIARF 117
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 196 PCELEFLVIAKWQFICGNE 252
PCEL +V+AK+QF N+
Sbjct: 4205 PCELADVVVAKYQFEVPNQ 4223
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm receptor
protein 138 protein.
Length = 328
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 155 MTVVAVGTFLFTWWQEREVPPPHG 84
MT+ + + +FTW + +P HG
Sbjct: 41 MTIFTINSIIFTWVEMMSLPLMHG 64
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 209 NSWSSQNGNLFVATKNDNDCD 271
N W+ QN N + +N+ CD
Sbjct: 566 NLWTKQNSNTTLIKRNETTCD 586
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,023,558
Number of Sequences: 27780
Number of extensions: 155997
Number of successful extensions: 425
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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