Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h02r
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    31   0.16 
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila...    29   0.48 
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    27   3.4  
At5g61670.2 68418.m07738 expressed protein                             26   5.9  
At5g61670.1 68418.m07737 expressed protein                             26   5.9  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    26   5.9  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    26   5.9  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    26   5.9  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    26   5.9  
At1g24010.1 68414.m03031 expressed protein                             26   5.9  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    25   7.8  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    25   7.8  
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ...    25   7.8  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    25   7.8  

>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 36  RCTMVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 155
           RC +  LL S I+ +SS +  N P  PP K    ++ N H
Sbjct: 300 RCMIASLLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339


>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 523

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 45  MVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA*CYSIS 179
           MVL+ + P      + +G +P LPP  +K SDR     A C +++
Sbjct: 242 MVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 197 GSNTSAANAIALGAMTVVAVGTFLFTWWQERE 102
           G   + A  +A GA  + A     F WW+ R+
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At5g61670.2 68418.m07738 expressed protein
          Length = 307

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 36  RC--TMVLLLSSPIRALSSVRWGNLPFLPPSKEKCSD 140
           RC  T  L+L+ P+ A++    GN    PP  E+CS+
Sbjct: 243 RCSSTGALVLTEPVSAIAG---GNHSLSPPKTERCSN 276


>At5g61670.1 68418.m07737 expressed protein
          Length = 307

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 36  RC--TMVLLLSSPIRALSSVRWGNLPFLPPSKEKCSD 140
           RC  T  L+L+ P+ A++    GN    PP  E+CS+
Sbjct: 243 RCSSTGALVLTEPVSAIAG---GNHSLSPPKTERCSN 276


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 222 DDQEF*FA-GQQHIRC*CYSTRRDDGCGGRNISLYLVARKGGSPTARSSRRES 67
           DD EF  A   +++R   Y +RRD     R  S      +G SP+   SR  S
Sbjct: 175 DDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRS 227


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 117 PSKEKCSDRHN-RHRA*CYSISSGCV--AALRIRILGHRKMAIYLWQRKTTMIVMEHF 281
           P + KC   H+   +  C +I++G       R +I GH  + ++ +    ++I+ +HF
Sbjct: 401 PFEVKCKPHHSPTAKFQCGNITAGFPFSGGNRPQICGHPSLELHCYNNMASIIISDHF 458


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 142 RSEHFSLLGGKKGRFP 95
           RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 179 ANAIALGAMTVVAVGTFLFTWWQERE 102
           A  +A GA  + A     F WW+ R+
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


>At1g24010.1 68414.m03031 expressed protein
          Length = 141

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 203 N*NSWSSQNGNLFVATKNDNDCDGTLCTVQIE 298
           N + +    G + +    DNDCD  + TV+ E
Sbjct: 78  NPDGYKKLEGTMTITHVEDNDCDRAILTVKYE 109


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 203 SQGSNTSAANAIALGAMTVVAVGTFLFTWWQER 105
           S+    + A   ++G ++++ +   LF WW++R
Sbjct: 242 SRNHKMAIAVGSSVGTVSLIFIAVGLFLWWRQR 274


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 101 PPFLATK*REMFRPPQPSSRLVL*H*QRMCCC 196
           PP  A + R + RPP P   L +   + +CCC
Sbjct: 57  PPPPAMRRRVLPRPPPPPPPLPMFDAEVLCCC 88


>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 362

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 212 SWSSQNGNLFVATKNDNDCDGTLCTV 289
           SWSSQN +   A +++ D D   C +
Sbjct: 80  SWSSQNNHTLKAAEDEEDQDIANCLI 105


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 219 DQEF*FAGQQHIRC*CYSTRRDDGCGGRNISLYLVARKGGSPTARSSRRESAKIVAEP*C 40
           D EF  +G + +R    ++R  D     +I   LV  +GG  + RS      ++V++P  
Sbjct: 599 DLEF-GSGGKLLRNDSMTSRGSDSTEAHSIGTPLVGEEGGITSIRSFVEGLKEMVSDPEN 657

Query: 39  SGKI 28
           SGK+
Sbjct: 658 SGKM 661


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,458,557
Number of Sequences: 28952
Number of extensions: 142033
Number of successful extensions: 433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)