Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h02f
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   29   1.1  
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                28   2.0  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4)                   27   4.6  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   27   6.1  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      26   8.0  

>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 158  RLWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT*CSGKIIL 286
            +LW    F + G KKG FP+  ++  R+ +   +  CS  +IL
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNKVKKKE-CSHTVIL 1121


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 258 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 154
           L L+  + A+  V W +L FLPP++ +  D HN++
Sbjct: 128 LQLAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 1   WSRFQSVPCKVFHHNHCRF 57
           + RF S+ C +FH NH  F
Sbjct: 510 FERFLSITCPIFHRNHVTF 528


>SB_18476| Best HMM Match : EF1_GNE (HMM E-Value=3.4)
          Length = 277

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 79  HFAMTKNSNSQGSNTSAANAIALGAMT 159
           H   TK SNS  S T+A NA+   A+T
Sbjct: 249 HRDTTKGSNSSLSKTTALNAVKFAAIT 275


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -2

Query: 303 KYYFANKIIFPL---HYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 154
           +Y     ++FP+   H V+ +S P    SS    +    PPS  +   R +RH
Sbjct: 316 RYLHVTALVFPITIVHLVIFMSPPSSFQSSPSVSSSSLSPPSSFQSYHRPSRH 368


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 318 QACTRKYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSD 169
           Q C   Y  +  +IFP  Y L     +  LS  R  N   + P  +KC D
Sbjct: 787 QKCLEAYLESKCVIFPRFYFLSNDELLEILSQTR--NPHAVQPHLQKCFD 834


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,586
Number of Sequences: 59808
Number of extensions: 223689
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)