Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h02f
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59730.1 68416.m06664 receptor lectin kinase, putative simila...    31   0.30 
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    27   5.0  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    26   6.6  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    26   8.7  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    26   8.7  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    26   8.7  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    26   8.7  
At1g24010.1 68414.m03031 expressed protein                             26   8.7  

>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 523

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 270 LHY-VLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA*CYSIS 130
           LHY VL+ + P      + +G +P LPP  +K SDR     A C +++
Sbjct: 239 LHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 112 GSNTSAANAIALGAMTVVAVGTFLFTWWQERE 207
           G   + A  +A GA  + A     F WW+ R+
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 255 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 154
           LL S I+ +SS +  N P  PP K    ++ N H
Sbjct: 306 LLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 87  DDQEF*FA-GQQHIRC*CYSTRRDDGCGGRNISLYLVARKGGSPTARSSRRES 242
           DD EF  A   +++R   Y +RRD     R  S      +G SP+   SR  S
Sbjct: 175 DDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRS 227


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 192 PSKEKCSDRHN-RHRA*CYSISSGCV--AALRIRILGHRKMAIYLWQRKTTMIVMEHF 28
           P + KC   H+   +  C +I++G       R +I GH  + ++ +    ++I+ +HF
Sbjct: 401 PFEVKCKPHHSPTAKFQCGNITAGFPFSGGNRPQICGHPSLELHCYNNMASIIISDHF 458


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 167 RSEHFSLLGGKKGRFP 214
           RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 130 ANAIALGAMTVVAVGTFLFTWWQERE 207
           A  +A GA  + A     F WW+ R+
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


>At1g24010.1 68414.m03031 expressed protein
          Length = 141

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 106 N*NSWSSQNGNLFVATKNDNDCDGTLCTVQIE 11
           N + +    G + +    DNDCD  + TV+ E
Sbjct: 78  NPDGYKKLEGTMTITHVEDNDCDRAILTVKYE 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,037,932
Number of Sequences: 28952
Number of extensions: 152679
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)