Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h01r
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   0.99 
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.2  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    25   9.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -3

Query: 386 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 213
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S    T  +  S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 336 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 229
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -3

Query: 407 SLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTG 228
           S PR  + S   +  +ATS   + + + S +NS  +K +R   S++   ++  + P +  
Sbjct: 279 SSPRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLSLS 338

Query: 227 KTCLS 213
            T  S
Sbjct: 339 STAPS 343


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 447 EIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGH 268
           ++G++ +    Q   + RI    R+ T   +LLHD+E   Y +++++  Q   +    G 
Sbjct: 159 QVGSIVEG--PQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQ 216

Query: 267 TSDLKR 250
              L++
Sbjct: 217 YKKLQQ 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,113
Number of Sequences: 5004
Number of extensions: 46369
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)