Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h01r
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 43 2e-04
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 38 0.006
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.043
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 33 0.23
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 4.9
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 28 4.9
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 4.9
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 4.9
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 6.5
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 6.5
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 6.5
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 6.5
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 8.6
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/129 (25%), Positives = 57/129 (44%)
Frame = -2
Query: 636 YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVE 457
YF+ AK F++ SD+ E L++ RGG++ + D E
Sbjct: 36 YFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQDIQKPEND-------E 88
Query: 456 VGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSL 277
G + A AL +K E + +H ++D A +T +IEE+++ +Q +I
Sbjct: 89 WGTALKAFEAALALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINEF 144
Query: 276 AGHTSDLKR 250
A ++LKR
Sbjct: 145 ARMVANLKR 153
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/130 (23%), Positives = 59/130 (45%)
Frame = -2
Query: 639 SYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTV 460
++F+ AK F++ SD+ L++ RGG++ + K +K
Sbjct: 35 AHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNIQKPEKD----- 87
Query: 459 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 280
E G + A AL ++ + +H + +D A +T YI+E+++ +Q +I
Sbjct: 88 EWGTVLEAFEAALALERANNASLLKLHGIAEQRND----AHLTNYIQEKYLEEQVHSINE 143
Query: 279 LAGHTSDLKR 250
A H +++KR
Sbjct: 144 FARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 378 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 223
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -2
Query: 513 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 334
D S+HTT S TVE H++ ++A ++ T + E + FI + + + L+ A
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682
Query: 333 TQYIEEEFVSQQ-ADTIRSLAGHTSDLKRFITENNG 229
T + E S++ A+ IRS + + +++ +G
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHG 718
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 375 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 226
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 375 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 226
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 101 FRYKYGCLIVMYPFLF*AKNMLCNCF 24
F + YG L+ YPF+F +L CF
Sbjct: 15 FFHSYGLLVSGYPFIFLVSPILVTCF 40
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -2
Query: 324 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 205
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -2
Query: 324 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 205
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 401 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 225
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 224 TCLSP 210
LSP
Sbjct: 257 RSLSP 261
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 401 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 225
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 224 TCLSP 210
LSP
Sbjct: 257 RSLSP 261
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 401 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 225
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 224 TCLSP 210
LSP
Sbjct: 257 RSLSP 261
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -2
Query: 537 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNS 358
+T+ G D S L D+G + VG ++ ALA +K + + I RE +
Sbjct: 4372 ITREDGGDDNKSPDELIDDRGRSTGSAVGDKLAALAAFNAARKNAEDALLDITREDGGDD 4431
Query: 357 DLLHDAEITQYI-EEEFVSQQADTI 286
+ D I +EE V++ DT+
Sbjct: 4432 NKSPDELIDDLAKKEETVAKLLDTV 4456
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 401 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSS 252
PRG + + SL T S S++T V P VAS TP TSS
Sbjct: 103 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,337
Number of Sequences: 27780
Number of extensions: 259333
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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