Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h01f
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.022
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.088
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.15 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.20 
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.5  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          29   3.3  
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   5.8  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   28   5.8  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 123 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 284
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 143 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 265
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 135 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 284
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 336 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 434
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 542 RPRRCSCCPVAFQCGVTREVHL 477
           RP  C  CP  F+C  TR  HL
Sbjct: 405 RPYACDKCPRTFKCRSTRNTHL 426


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 420 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDRAATT 530
           +DS ++ +G +K V K GG+  F  H   K D    T
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSDTRIQT 196


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 404 LQEIIGRFVGENHWSHKARH*EGWEDGLLESHHTERRQGSNY 529
           L  IIG F+G  + S KA+   G++DG+ +++     +G  +
Sbjct: 185 LDVIIGTFIGPQNASSKAQGFLGYQDGVFQTNFMPDFRGEGF 226


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 354 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 482
           A++F     +  GFA  F+K +++ +      ++ + KRGG++
Sbjct: 1   AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRV 43


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 312 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 425
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 134 YEGVCSHRCLSGSGCAGRGRLML 202
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +2

Query: 236 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQEI 415
           +S +  R   PI G+     R  G    +  +  PLSP   ++    D   R R  LQ +
Sbjct: 119 RSKSPVRSTSPILGRSSSPSRRGGSPSRILNSS-PLSPSKQVVDGDNDTVQRQRRELQLL 177

Query: 416 IGRFVGENHWSHKARH*EGWED 481
           IG     + +SH  +    W++
Sbjct: 178 IGELKDRDRFSHWKKDVRDWKE 199


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 59  RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 166
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 315 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 434
           +L L  SY Y   A YF+    +  GF K F+K + +  E
Sbjct: 21  NLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEERE 60


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 314 LTVFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRFVGENHW 445
           L V  TF P S V L +  +PD +G  RE L  ++    G   W
Sbjct: 32  LLVSATFFPPSTVTLRVSLVPDIRGTSREPLYCLLQSSSGLEKW 75


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 354 ASYFNNYQTNREGFAKLFRKLSDDSWE 434
           A +F+    N  GF K F+K S + WE
Sbjct: 30  AFHFDRDDINLPGFNKFFKKASKEEWE 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,819
Number of Sequences: 59808
Number of extensions: 350429
Number of successful extensions: 970
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)