Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g23r
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CQI5 Cluster: Kluyveromyces lactis strain NRRL Y-1140...    36   1.3  
UniRef50_UPI00004984EA Cluster: conserved hypothetical protein; ...    34   3.1  
UniRef50_Q058C0 Cluster: Type III protein export, membrane compo...    34   4.1  
UniRef50_UPI000038E0B1 Cluster: hypothetical protein Faci_030002...    33   9.4  

>UniRef50_Q6CQI5 Cluster: Kluyveromyces lactis strain NRRL Y-1140
           chromosome D of strain NRRL Y- 1140 of Kluyveromyces
           lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
           lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-
           1140 of Kluyveromyces lactis - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 832

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +2

Query: 221 HSALFVNSHKIFFIITLFIS*AHLQNRVCVGLCSLVTYMYVYYKLILEYILIFVLIIMNT 400
           + +L ++S KI   +TLF+  A   N   V +     Y     K+I   ++IFV+I++N+
Sbjct: 368 YQSLNLSSGKIAGFVTLFLVFAIFINLCDVRIFGNFVYFVTIIKIIFTIVMIFVMIVLNS 427

Query: 401 G 403
           G
Sbjct: 428 G 428


>UniRef50_UPI00004984EA Cluster: conserved hypothetical protein;
           n=2; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 235

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +2

Query: 212 TEMHSALFVNSHKIFFIITLFIS*AHLQNRVCVGLCSLVTYMYVYYKLILE----YILIF 379
           T+    LF++SH +   +  +++ + +   VCV       ++ + YK ++E    Y ++F
Sbjct: 9   TQEEIRLFISSHPVTNPLLFYLNTSSVFIPVCVNQQEYSQWLQLIYKTLIEINESYSVLF 68

Query: 380 VLIIMNTGLSTNFNNL 427
           VL+I    L   +NN+
Sbjct: 69  VLLIPRVNLFPRYNNV 84


>UniRef50_Q058C0 Cluster: Type III protein export, membrane
           component; n=1; Buchnera aphidicola str. Cc (Cinara
           cedri)|Rep: Type III protein export, membrane component
           - Buchnera aphidicola subsp. Cinara cedri
          Length = 266

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 221 HSALFVNSHKIFFIITLFIS*AHLQNRVCVGLCSLVTY---MYVYYKLILEYILIFVLII 391
           +S +F N   IFF+ T FI   HL+  V + + S   Y    +++YK I  YI+ F+ II
Sbjct: 122 YSLIFSNLFSIFFLFTFFICNMHLKLLVLL-IHSFEIYPLNNFIFYKKIFFYIVNFLNII 180

Query: 392 MNTGLS 409
               +S
Sbjct: 181 FFQSVS 186


>UniRef50_UPI000038E0B1 Cluster: hypothetical protein Faci_03000226;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03000226 - Ferroplasma acidarmanus fer1
          Length = 345

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 308 VGLCSLVTYMYVYYKLILEYILIFVL-IIMNTGLSTN 415
           VG+ + V Y++ YY L L YIL+ V+ II+N  L TN
Sbjct: 100 VGVNAFVAYLF-YYLLFLFYILVLVINIILNYNLYTN 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,945,669
Number of Sequences: 1657284
Number of extensions: 10142658
Number of successful extensions: 16177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16165
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)