Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g23r
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF040656-3|AAB95049.1|  385|Caenorhabditis elegans Innexin prote...    29   3.3  
AC084159-16|AAK39357.1|  205|Caenorhabditis elegans Hypothetical...    29   4.4  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    28   7.7  

>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 266 TLFIS*AHLQNRVCVGLCSLVTYMYVYYKLILEY 367
           +L+ S  H  N   VG+C+++ Y+Y+ Y+LI ++
Sbjct: 194 SLYHSYPHSINNFAVGICTIILYLYLSYRLIFKF 227


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 241 FTQNLFYNNFIYKLSTFTK*GLCRPVQFSYIYVCI 345
           FTQ +FY NF    S F    LCR      IY+ I
Sbjct: 15  FTQTVFYLNFYLLYSIFVSKKLCRKPDLVLIYIRI 49


>AF040656-3|AAB95049.1|  385|Caenorhabditis elegans Innexin protein
           13 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 320 SLVTYMYVYYKLILEYILIFVLIIMNTGLSTNF 418
           S +TY+Y++ K +    ++F  II+N  L T++
Sbjct: 181 SYLTYLYLFVKFLYLVQIVFQFIILNNFLGTSY 213


>AC084159-16|AAK39357.1|  205|Caenorhabditis elegans Hypothetical
           protein Y73B3A.7 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 AHLQNRVCVGLCSLVTYMYVYYKLI 358
           A L ++ C  +C L+TY Y YY ++
Sbjct: 141 ATLNSQSCDSMCCLLTYQYSYYTIL 165


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 314 LCSLVTYMYVYYKLILEYILIFVLIIMNTGL 406
           LC+L    Y+ Y+ +++Y+L+ + +I+ TG+
Sbjct: 193 LCALYKE-YIKYQKVIQYLLVILWVIVTTGV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,643
Number of Sequences: 27780
Number of extensions: 270394
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)