Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g23r
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.24 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.24 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 164 HNYL*ILQVPIFT*NKTEMHSALFVNSHKIFFIITLFIS*AHLQNRVCVGLCSLVTYMY 340
           HNY+  +Q+  F  N     + +  NSH+  F++   +    L NR+ V      T+ Y
Sbjct: 533 HNYMNFMQMDEFVVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKY 591


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 164 HNYL*ILQVPIFT*NKTEMHSALFVNSHKIFFIITLFIS*AHLQNRVCVGLCSLVTYMY 340
           HNY+  +Q+  F  N     + +  NSH+  F++   +    L NR+ V      T+ Y
Sbjct: 533 HNYMNFMQMDEFVVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKY 591


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 164 HNYL*ILQVPIFT*NKTEMHSALFVNSHKIFFII 265
           HNY+  +Q+  F  N     + +  NSH+  F++
Sbjct: 159 HNYMNFMQMDEFVVNLKSGSNTIERNSHESXFVV 192


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 345 YTYIYVTKLHRPTQTLFCKC 286
           Y  +   K+H  T TL CKC
Sbjct: 26  YVSLGALKMHIRTHTLPCKC 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,966
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)