Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g23f
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...   124   1e-29
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    31   0.10 
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    29   0.53 
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    28   0.93 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.93 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.6  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          26   5.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   6.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.6  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   8.7  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   8.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.7  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score =  124 bits (299), Expect = 1e-29
 Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 1/173 (0%)
 Frame = +1

Query: 91  ENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVK 270
           ++K    LP NV P HY L L P+LE FT+ GK  V + ++  +N I L+ ++L +    
Sbjct: 13  DDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAA 72

Query: 271 LQYNDGSNSAIIPSSVELSTTDETASIYFSESL-LEGEATLYSEFTGEINDKMKGLYRSK 447
           L++  GS +     + E+S  DE   + F  ++     A L   FT  I+  M+G YRS 
Sbjct: 73  LEW--GSQTVW---ASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSS 127

Query: 448 YIAPNGEERYAAVTQFEATDARRCFPCWDEPAIKATFDITLQVPADRVALSNM 606
           Y+  +G  +Y A TQ E T ARR FPCWDEPA+KATF I +    +   LSNM
Sbjct: 128 YVDSDGNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTILSNM 180


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 40   YTARPTLAISKEKVT-MPENKPFQRLP---NNVIPKHYALELIPNLEKFTFKGK--TAVK 201
            Y    T  ++ E++  + E+   +RL    NN++  H  ++L+P L    F GK   +VK
Sbjct: 802  YVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGKFPDSVK 861

Query: 202  VSIVNPTNVIVLNSLDLDLKNVKLQYNDGSNSAIIPSSVELS 327
            +S V  + ++ L      +  ++ ++N  SN  ++   V+LS
Sbjct: 862  LSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQ-LLAMLVKLS 902


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = -2

Query: 472 VLLHWEQCIYCGTSLSFCHLFHL*TQNKASLRLLVKILRNKYLLFHQLYSILLTMELSLN 293
           +L  WE  IYC      C      + +  S  ++VKIL   +LL+   Y +      + +
Sbjct: 163 LLKAWE--IYCLAEAQTCIFSKANSNDTTSESIIVKILAKVFLLYEDAYKLFKNATGAPS 220

Query: 292 *SHRYTEVSHFSNPSLSYSILSHS 221
               +T +      +++Y I+S +
Sbjct: 221 IFVHWTYIQKLFYQTITYQIISRT 244


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 310 SSVELSTTDETASIYFSESLLEGEATLYSEFTGEINDKMKGLYRSK 447
           SSVE STT   +S+     L EGE TL      EI+  M    +S+
Sbjct: 90  SSVEKSTTIPNSSVVLDHLLNEGENTLEEVKPSEIHPHMSWSSKSE 135


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/85 (30%), Positives = 41/85 (48%)
 Frame = -2

Query: 448 IYCGTSLSFCHLFHL*TQNKASLRLLVKILRNKYLLFHQLYSILLTMELSLN*SHRYTEV 269
           IYCGTS+   H F L  ++    +LL++  + K  + + +Y   +T       SH    V
Sbjct: 623 IYCGTSMFHSHKFILCARSSFLRKLLLQ--KKKSSVSNIIYIEEITQ------SHSTIRV 674

Query: 268 SHFSNPSLSYSILSHSLD*QSILSP 194
                P L+ +IL H L   ++LSP
Sbjct: 675 EDI--PPLAVAILLHYLYTDTLLSP 697


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 259 KNVKLQYNDGSNSAIIPSSVELSTTDETASIYFSESLLEGEATLYS 396
           +N  L   D + ++    ++ +S TD  AS   S SLL     LYS
Sbjct: 47  RNGLLSLLDSNTTSASVQTIAISQTDNAASCIPSASLLSSSVVLYS 92


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
 Frame = +1

Query: 127 IPKHYALELIPN---LEKFTFKGKTAVKVSIVNPTNVIVLNSL-DLDLKNVKLQYNDGSN 294
           + K+  LELIP+   L    F    A+ V      + I  N +   +L N  +   D  N
Sbjct: 5   LEKNLILELIPHFYSLGWMKFGSGYAICVKDRVQRDFITENDIVTFNLSNQSVT-KDLVN 63

Query: 295 SAIIPSSVELSTTDETASIYFSESLLEGEATLYSE-FTGEINDKMKGL 435
            A I S V LS  D  A IY S S+    A++Y+E FT +  + +KG+
Sbjct: 64  WAYIFSWV-LSNMDAVACIY-STSVAAVGASMYNEKFTTQSKEMIKGI 109


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 133  KHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLD--LDLKNVKLQYNDGS-NSAI 303
            +HY LEL  +L      G+T +  S    ++VIV   LD  +DL   + Q++D S NS  
Sbjct: 1522 EHYYLELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDELMDLTETR-QFSDRSPNSEF 1580

Query: 304  IPSSVEL 324
             P +  L
Sbjct: 1581 TPENDSL 1587


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 487 TQFEATDARRCFPCWDEPAIK--ATFDITLQVP 579
           ++ +A  AR   PC D P++K   TF I  ++P
Sbjct: 135 SECQAIHARSFIPCQDTPSVKVPCTFKIRSKLP 167


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 172 FTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDGSN 294
           F F     ++  +   TN+ +LNSLD +L  VK   +D S+
Sbjct: 131 FQFSNIEKLRKLVYQLTNISILNSLD-NLDKVKYLLHDSSS 170


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 1   FGVHSVTRSLRYIYTARPTLAISKEKVTMPENK 99
           +  H++TRS+R +YTA  ++  +  K+   E K
Sbjct: 68  YNAHALTRSIRTVYTA--SIIAADYKLNFSEKK 98


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 535 HPSKGNIVVHLSLQIG*QPHIVLLHWEQCIY 443
           H SKGN+     + I   P +++LH ++  Y
Sbjct: 368 HSSKGNVTATKQMYIESLPPVLILHLKRFFY 398


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 205 SIVNPTNVIVLNSLDLDLKNVKLQYNDGSNSAIIPSSVELSTTDETASIYFSESLLEGEA 384
           ++VN T +   NSL   L  V       +NS  IP  V  S + E      S +L  GE 
Sbjct: 700 NVVNKTALFTANSLAPILSRVSNNVTIENNSTDIPHVVIASISKEGVP---SVTLSTGET 756

Query: 385 TLYS 396
            +YS
Sbjct: 757 YVYS 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,896
Number of Sequences: 5004
Number of extensions: 52516
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)