Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g23f
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.78 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.78 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.78 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 VTQFEATDARRCFPCWDEPAIKATFDITLQ 573
           + +  A    + + C DEP +  TF+IT++
Sbjct: 212 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 241


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 VTQFEATDARRCFPCWDEPAIKATFDITLQ 573
           + +  A    + + C DEP +  TF+IT++
Sbjct: 212 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 VTQFEATDARRCFPCWDEPAIKATFDITLQ 573
           + +  A    + + C DEP +  TF+IT++
Sbjct: 208 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 237


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 511 RRCFPCWDEPAIKATFDITLQ 573
           ++ +PC DEP     F+ITL+
Sbjct: 212 KKYYPCCDEPYPDIFFNITLR 232


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 484 VTQFEATDARRCFPCWDEPAIKATFDITLQ 573
           + +  A+     +PC  EP    TF+IT++
Sbjct: 217 ILEVPASRNEEYYPCCTEPYSDITFNITMR 246


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 193 AVKVSIVNPTNVIVLNSLDLDLKNVKLQY 279
           AVK  +V P      NS+    K V L Y
Sbjct: 80  AVKAGLVQPQGTTFSNSISQLRKEVSLLY 108


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   WSSLCHSVITVHLYSASYIGDLERKSD 83
           W S    +I V  Y  +Y GD   ++D
Sbjct: 196 WKSGTWDIINVPAYLNTYKGDFPTETD 222


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 455 LPMEKNDMRLSPNLKRQMHDDVSLAGMNL 541
           LPM K+D    P   +  +   S+AG+N+
Sbjct: 220 LPMWKSDTSDGPESHQNSNVPKSVAGLNV 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,833
Number of Sequences: 438
Number of extensions: 3143
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)