Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   4.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.1  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    26   6.1  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    26   6.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.0  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -2

Query: 271 HNQNYEEMYKYIPKDILPVEYXXXXXXXXXXI-DYWRKKVKEYSDWLEEDDQYGTDESKR 95
           H  +Y  M + +     P+E             ++WR  + E SD  EE+D      SK 
Sbjct: 544 HRSSYVYMNELVDHFFPPIEVSTRDEVSSFTDVNFWRSPLLELSD--EEEDDTNKSTSKS 601

Query: 94  PGKPKTAE 71
           P  PK  +
Sbjct: 602 PKTPKNTK 609


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 50  TLXAEHILSGLRFPWSL---GLVRTILIIF 130
           TL    IL  LRFPW +   G+++T+L++F
Sbjct: 88  TLNVLSILLYLRFPWIIGEAGVLKTLLMLF 117


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 472  YDADKYNITDVMAVSFVLQKIIMMEDDNAIVAGILS 365
            Y+  KY I D+M   F LQ+  ++  D+ ++  +L+
Sbjct: 1063 YEWVKYQIPDIMLSQFDLQEKKVLSSDDLLLYNVLA 1098


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -2

Query: 259 YEEMYKYIPKDILPVEYXXXXXXXXXXIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPK 80
           Y+ +Y  IPKD L   Y           DY ++  K+     E D     + S+   +P 
Sbjct: 140 YQLLYPPIPKDELVEAYRKELIRTYFPNDYPKEANKDIPSSAEADTMLNLESSENREQPT 199

Query: 79  TAED 68
           + ++
Sbjct: 200 SLKE 203



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 227 VLRDIFVHLFIILVVDVELRSN 292
           +++DI++ L  +L VDVE+ +N
Sbjct: 53  IMQDIYIELLELLQVDVEILAN 74


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 449 YRCHGCILCLTKDYYDGRRQRNSGR-HFVNFRFRYCK 342
           Y C  C + LT D    R+  N+GR H  N +  Y K
Sbjct: 4   YLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTK 40


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 370 LSILDLDTVKMGHFLQMTPMVMKKMVVASQLYVHNQNYEEMYKYIPKDIL 221
           + ++ LDT    HFL+ TP       + +    ++ N+E M K   K+ L
Sbjct: 416 VKLVSLDTANEKHFLKHTPNSAAHQSLLNTNMFNDANFEFMVKEHIKNFL 465


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 691 WLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELFSIKP 578
           +LL  L G KY L  +    D Y  + T    +FS+ P
Sbjct: 686 FLLYSLTGMKYPLGHSNNINDAYVVIHTLLKVIFSVVP 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,639
Number of Sequences: 5004
Number of extensions: 61041
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)