Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1176 + 10112257-10113126                                         31   0.68 
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484...    30   2.1  
01_07_0007 + 40378472-40378636,40378726-40378858,40378941-403791...    28   6.3  

>06_01_1176 + 10112257-10113126
          Length = 289

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/65 (33%), Positives = 24/65 (36%)
 Frame = -1

Query: 458 VQHYRCHGCILCLTKDYYDGRRQRNSGRHFVNFRFRYCKNGSFLTNDSNGHEKNGGCFSA 279
           V+  RC  C    TK  Y      +  RHF     RY   G  L N   G    GGC   
Sbjct: 27  VEEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVG----GGCRKP 82

Query: 278 LRPQP 264
            RP P
Sbjct: 83  KRPAP 87


>03_05_1163 -
           30847591-30847663,30847909-30848042,30848443-30848484,
           30848613-30848654,30849362-30849461,30849605-30849666,
           30851001-30851015,30851098-30851179,30853510-30853694
          Length = 244

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 323 NDSNGHEKNGGCFSALRPQPE 261
           N SNGH   GG FS+  PQPE
Sbjct: 194 NCSNGHGGGGGVFSSEPPQPE 214


>01_07_0007 +
           40378472-40378636,40378726-40378858,40378941-40379111,
           40379295-40379373,40379477-40379590,40379664-40379730,
           40379819-40379924,40380009-40380067,40380258-40380367,
           40380455-40380588,40380717-40380802,40380930-40381019,
           40381104-40381283
          Length = 497

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = -2

Query: 409 IMMEDDNAIVAGILSILDLDTVKMGHFLQMTPMVMKKMVVASQLYV 272
           +++ D NA++ GIL+  D+ T  +   L++    + K++  + L+V
Sbjct: 39  VLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFV 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,932
Number of Sequences: 37544
Number of extensions: 369625
Number of successful extensions: 945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)