Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g22r
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47444| Best HMM Match : Strep_SA_rep (HMM E-Value=5.9) 30 1.6
SB_26846| Best HMM Match : Pox_A32 (HMM E-Value=0.0014) 30 1.6
SB_26107| Best HMM Match : Strep_SA_rep (HMM E-Value=5.8) 30 1.6
SB_20289| Best HMM Match : DUF1604 (HMM E-Value=3.7) 30 1.6
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63) 30 1.6
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07) 29 2.8
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_42470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.7
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036) 29 3.7
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 4.9
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2) 28 6.5
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_47444| Best HMM Match : Strep_SA_rep (HMM E-Value=5.9)
Length = 129
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWLEE+
Sbjct: 50 WQKKRQEYQDWLEEE 64
>SB_26846| Best HMM Match : Pox_A32 (HMM E-Value=0.0014)
Length = 509
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWLEE+
Sbjct: 427 WQKKRQEYQDWLEEE 441
>SB_26107| Best HMM Match : Strep_SA_rep (HMM E-Value=5.8)
Length = 171
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWLEE+
Sbjct: 92 WQKKRQEYQDWLEEE 106
>SB_20289| Best HMM Match : DUF1604 (HMM E-Value=3.7)
Length = 296
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWLEE+
Sbjct: 50 WQKKRQEYQDWLEEE 64
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -2
Query: 622 YSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPRVSLIIPGR 473
Y V P F+ P NPL +I S+G I LP S L IPGR
Sbjct: 1420 YWVPDAGPSGFTSIPENPL-GQIASIGRISNLPLVGLSQQLTPPLKIPGR 1468
>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
Length = 936
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWLEE+
Sbjct: 559 WQKKRQEYQDWLEEE 573
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 107 VRTILIIFFQPVTVFLYFFPPVIYNFFNRTTAPAIFYW*NVLRDIFVHLFIILVVDVELR 286
+ TI+I+ P T + Y++ P+ N++ Y+ + + I + I + +
Sbjct: 609 ITTIIILPASPSTYYHYYYQPITIVTINKSPLSPSTYFHHHHQHITIITIITIKILPSST 668
Query: 287 SNHHFFHDH 313
SN+ +H H
Sbjct: 669 SNYFHYHQH 677
>SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)
Length = 773
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -2
Query: 304 KKMVVASQLYVHNQNYEEMYKYIPKDILPVEYXXXXXXXXXXIDYWRKKVKEYSDWLEED 125
++ V+S+L +H Q YEE K +P +LP Y I ++ K++ D L
Sbjct: 252 ERRYVSSRLEIHRQMYEEKVKPVP--LLP-SYESPQALAEDFILFFTTKIQHLKDNLRSS 308
Query: 124 DQYGTDESKRPGKPK 80
+ S P +P+
Sbjct: 309 PLLTMEMSVTPAQPQ 323
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 468 SYRPGMIRLTRGESE---VAVLGNINIAPKLNISSNNGLLGFILNNSGAVV 611
+Y G++ T G+ + +L N+N+A L++ SN G +G L A +
Sbjct: 456 NYTQGILEATDGQGPDVILEMLANVNLAKDLDLVSNGGRIGDELKEMSAAM 506
>SB_42470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 169 WRKKVKEYSDWLEE--DDQYGTDESKR 95
W+KK +EY DWL E +D+ DE+ +
Sbjct: 50 WQKKRQEYQDWLTEQYNDKVRADENDK 76
>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 2629
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 169 WRKKVKEYSDWLEE--DDQYGTDESKR 95
W+KK +EY DWL E +D+ DE+ +
Sbjct: 2482 WQKKRQEYQDWLTEQYNDKVRADENDK 2508
>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
Length = 367
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 537 IAPKLNISSNNGLLGFILNNSGAVVRTE*YKSNFSFVLSKLYLHPRRN 680
I+ KL + +GLLG++L + G + Y + VL+K+ H ++
Sbjct: 274 ISDKLKVDPYSGLLGYVLMDCGVIFTAFFYYNVRKMVLTKICHHDAKD 321
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 169 WRKKVKEYSDWLEE--DDQYGTDES 101
W+KK +EY DWL E +D+ DE+
Sbjct: 1064 WQKKRQEYQDWLAEQYNDKVRADEN 1088
>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 691 WLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELF 590
W+ +F Y L+ KEK DL+Y + + A F
Sbjct: 113 WITSFSWDEVYGLDNCKEKFDLFYQILSDAINQF 146
>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 169 WRKKVKEYSDWLEED 125
W+KK +EY DWL E+
Sbjct: 56 WQKKRQEYQDWLAEE 70
>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 691 WLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELF 590
W+ +F Y L+ KEK DL+Y + + A F
Sbjct: 154 WITSFSWDEVYCLDNCKEKFDLFYQILSDAINQF 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,378,177
Number of Sequences: 59808
Number of extensions: 434197
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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