Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   7.1  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   9.4  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 42  LKEPSXPNISSAVFGF 89
           L+EPS P +S   FGF
Sbjct: 575 LEEPSSPRLSDRQFGF 590


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -2

Query: 415 KIIMMEDDNAIVAGILSILDLDTVK-MGHFLQMTPMVMKKMVVA-SQLYVHNQNYEEMYK 242
           +I+  +   +IVAG L+    D V  +  F  M    ++ ++VA  Q+Y +NQN E  Y+
Sbjct: 530 RIVQCDQRISIVAGYLT----DEVSGLSPFTFMHRDDVRWVIVALRQMYDYNQNGESCYR 585

Query: 241 YIPK 230
            + +
Sbjct: 586 LMSR 589


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,225
Number of Sequences: 2352
Number of extensions: 14542
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)