Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical...    29   3.3  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
           protein K02C4.3 protein.
          Length = 1307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 172 YWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFG 59
           YW  K+K+  D LEE ++     + R   PK   D FG
Sbjct: 739 YWTYKLKKSIDGLEEWEKLNDQNADRVDWPKVESDSFG 776


>AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical
           protein C08F1.1 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 549 LNISSNNGLLGFILNNSGAVVRTE*YKSNFSFVLSKLYLHPRR 677
           ++I +NNG    +LN    ++  E +    S+ LS +Y H  R
Sbjct: 308 ISIKNNNGFASLMLNCENELIEKERWAIQASYQLSLVYCHGNR 350


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 166 RKKVKEYSDWLEEDDQYGTDESKRP 92
           RKK+  Y    E+DD+ G+  SK+P
Sbjct: 3   RKKLAAYGQEFEDDDEEGSSVSKKP 27


>Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical
           protein T08G11.2 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 649 RTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATS 509
           RT  K + +YS+RTT  + F +    P   +  SL  +++  KT+ +
Sbjct: 218 RTTTKKNRHYSIRTTCDQQFFVDCGYPNVRKHYSLSHLVMFYKTSAT 264


>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 676 LRGCKYSLERTKEKL-DLYYSVRT 608
           +  CK SL R KEKL +L YS RT
Sbjct: 277 INSCKTSLRRIKEKLNNLKYSART 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,141,752
Number of Sequences: 27780
Number of extensions: 341343
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)