Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 681 HFYEDASTAWKGRRKNWIYI 622
           H+  D    +  RRK W+Y+
Sbjct: 714 HYETDPCVRYYPRRKEWLYL 733


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 201 LPPYSTGKMSLGIYLYIS 254
           LPP S  K+SLG+ + +S
Sbjct: 255 LPPDSGEKLSLGVTILLS 272


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 373 ILSILDLDTVKMGHFLQMTPMVMKKMVVASQLYVHNQNYEEM 248
           +LS ++L   KM    +  PMV       + +Y++N  + ++
Sbjct: 291 VLSRMNLTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDV 332


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 78  VFGFPGRL 101
           +FGFPGRL
Sbjct: 597 IFGFPGRL 604


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 78  VFGFPGRL 101
           +FGFPGRL
Sbjct: 597 IFGFPGRL 604


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 128 FFQPVTVFLYFFPPVIYNF 184
           +  P T F  F PP +Y F
Sbjct: 369 YIGPPTPFPRFIPPNVYRF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,297
Number of Sequences: 438
Number of extensions: 4656
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)