Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02920.2 68417.m00396 expressed protein                             32   0.43 
At4g02920.1 68417.m00395 expressed protein                             32   0.43 
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    30   1.3  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    29   3.0  
At5g25470.2 68418.m03029 expressed protein                             29   4.0  
At5g25470.1 68418.m03028 expressed protein                             29   4.0  
At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ...    28   5.3  
At3g06230.1 68416.m00716 mitogen-activated protein kinase kinase...    27   9.2  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   9.2  

>At4g02920.2 68417.m00396 expressed protein
          Length = 419

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 622 YSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPRVSLIIP--GRYDADKYNI 449
           +SVR+    LFS   SNP  +++LS+ +   L + +T+   ++S +IP   R+++D +  
Sbjct: 178 FSVRSNGHVLFS-SSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQRFESDVFTP 236

Query: 448 TDVMAVS 428
             + AV+
Sbjct: 237 AKLKAVT 243


>At4g02920.1 68417.m00395 expressed protein
          Length = 418

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 622 YSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPRVSLIIP--GRYDADKYNI 449
           +SVR+    LFS   SNP  +++LS+ +   L + +T+   ++S +IP   R+++D +  
Sbjct: 177 FSVRSNGHVLFS-SSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQRFESDVFTP 235

Query: 448 TDVMAVS 428
             + AV+
Sbjct: 236 AKLKAVT 242


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 420 KTKDTAMTSVMLYLSASYRPGMIRLTRGESEVAVLGNINIAPKLNISSNNGLLGFILNN 596
           KT++  + S ++YLS S  P  I    G++    L  +     L+   N G++   LNN
Sbjct: 441 KTREMHVNSTVIYLSDSDEPSSIEYLNGDN----LTQVESGSALSSGGNEGIVSLDLNN 495


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 233 RDIFVHLFIILVVDVELRSNHHFFHDHWSHL 325
           RD  V   +IL+ D+E R +   FHD W HL
Sbjct: 508 RDEPVGKAVILMNDIEKRIDDKPFHDRWVHL 538


>At5g25470.2 68418.m03029 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 601 PELFSIKPSNPLFDEILSLG-AILILPKT 518
           PEL+ + P NP F + L+ G  +L +PKT
Sbjct: 172 PELYLLNPKNPYFVKTLTKGNDVLYVPKT 200


>At5g25470.1 68418.m03028 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 601 PELFSIKPSNPLFDEILSLG-AILILPKT 518
           PEL+ + P NP F + L+ G  +L +PKT
Sbjct: 172 PELYLLNPKNPYFVKTLTKGNDVLYVPKT 200


>At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing
           protein identical to dof6 zinc finger protein GI:5689615
           from [Arabidopsis thaliana]
          Length = 245

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
 Frame = -1

Query: 455 QHYRCHGCILCLTKDYYDGRRQRNSGRHFVNFRFRYCKNGSFLTNDSNG-----HEKNGG 291
           Q  RC  C    TK  Y      +  R+F     RY   G  L N   G     H+++  
Sbjct: 38  QSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSS 97

Query: 290 CFSALR--PQPEL*RDVQIYP---*GHFTSRIWRERWFY*RNYRLLEEKSKGI 147
              +LR  P+P +  D + +P    G+  + I  E+      Y LL ++  G+
Sbjct: 98  ATKSLRTTPEPTMTHDGKSFPTASFGYNNNNISNEQMELGLAYALLNKQPLGV 150


>At3g06230.1 68416.m00716 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK8) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 293

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -2

Query: 379 AGILSILDLDTVKMGHFLQMTPMVMKKMVVASQLYVHNQNYEEMYKYIPKDILP 218
           +G +SIL +D + +G    +  +  K++ + S+  +  +NY   +K + +DI P
Sbjct: 118 SGEVSIL-MDYMDLGSLESLRGVTEKQLALMSRQVLEGKNYLHEHKIVHRDIKP 170


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 154  KEYSDWLEEDDQ-YGTDESKRPGKPKTAEDMFG-XEGSFRQLEFD*I*YSI 8
            K+ SD +E++DQ +GTD  K+  + K  +D+ G  +G     EFD   YS+
Sbjct: 4501 KDVSDQIEDEDQLHGTD--KKEEEEKEQDDVLGKNKGIEMSDEFDGKEYSV 4549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,176
Number of Sequences: 28952
Number of extensions: 309622
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)