Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22f
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   5.4  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    26   5.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    25   7.1  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   9.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.4  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 134 SKQPHLRARTDDQWLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELFSIKP 286
           S++  +       +LL  L G KY L  +    D Y  + T    +FS+ P
Sbjct: 673 SEETSINVEKGFHFLLYSLTGMKYPLGHSNNINDAYVVIHTLLKVIFSVVP 723


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 392  YDADKYNITDVMAVSFVLQKIIMMEDDNAIVAGILS 499
            Y+  KY I D+M   F LQ+  ++  D+ ++  +L+
Sbjct: 1063 YEWVKYQIPDIMLSQFDLQEKKVLSSDDLLLYNVLA 1098


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 44  PPELAEKARKELNEDPSRINSDIQHL 121
           PPE +E    E+NEDPS     I+ +
Sbjct: 236 PPEDSEDGISEMNEDPSESGEMIEQV 261


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 415 YRCHGCILCLTKDYYDGRRQRNSGR-HFVNFRFRYCK 522
           Y C  C + LT D    R+  N+GR H  N +  Y K
Sbjct: 4   YLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTK 40


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 494 LSILDLDTVKMGHFLQMTPMVMKKMVVASQLYVHNQNYEEMYKYIPKDIL 643
           + ++ LDT    HFL+ TP       + +    ++ N+E M K   K+ L
Sbjct: 416 VKLVSLDTANEKHFLKHTPNSAAHQSLLNTNMFNDANFEFMVKEHIKNFL 465


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 637 VLRDIFVHLFIILVVDVELRSN 572
           +++DI++ L  +L VDVE+ +N
Sbjct: 53  IMQDIYIELLELLQVDVEILAN 74


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   WKTSVTMSVRALPPELAEKARKELNE 85
           W TS    +++LPP L +K  ++L +
Sbjct: 68  WVTSKNEKLKSLPPALKKKIERQLQK 93


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 266 ELFSIKPSNPLFDEILSL 319
           +L+SIKPS P  DEI +L
Sbjct: 109 QLYSIKPSQPGIDEIDTL 126


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 185 FLRGCKYSLERTKEKLDLYYSVRTTAPELF-SIKPSNPLFDEILSLGAILILPKTATSD 358
           F+  C   ++    K    YS   T  + F ++  + P+FDEI  L   L   KT  SD
Sbjct: 689 FVEHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSD 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,619
Number of Sequences: 5004
Number of extensions: 55556
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)