Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22f
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1176 + 10112257-10113126                                         31   0.60 
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153...    30   1.4  
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484...    30   1.8  
03_06_0680 - 35497868-35497884,35498058-35501961                       29   2.4  
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313...    29   4.2  
01_07_0007 + 40378472-40378636,40378726-40378858,40378941-403791...    28   5.6  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    28   7.4  

>06_01_1176 + 10112257-10113126
          Length = 289

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/65 (33%), Positives = 24/65 (36%)
 Frame = +1

Query: 406 VQHYRCHGCILCLTKDYYDGRRQRNSGRHFVNFRFRYCKNGSFLTNDSNGHEKNGGCFSA 585
           V+  RC  C    TK  Y      +  RHF     RY   G  L N   G    GGC   
Sbjct: 27  VEEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVG----GGCRKP 82

Query: 586 LRPQP 600
            RP P
Sbjct: 83  KRPAP 87


>05_05_0170 +
           22913791-22914315,22914418-22914581,22914675-22915325,
           22915425-22915542,22915635-22915823,22915948-22916118
          Length = 605

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 83  EDPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LAFLRGCKYSLE 214
           ++P R+N   +H+K+ LS    + A T D W     L    GC Y  +
Sbjct: 404 DEPLRVNILFKHIKEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQ 451


>03_05_1163 -
           30847591-30847663,30847909-30848042,30848443-30848484,
           30848613-30848654,30849362-30849461,30849605-30849666,
           30851001-30851015,30851098-30851179,30853510-30853694
          Length = 244

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 541 NDSNGHEKNGGCFSALRPQPE 603
           N SNGH   GG FS+  PQPE
Sbjct: 194 NCSNGHGGGGGVFSSEPPQPE 214


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 32  VRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQW 175
           V  L   + E ARKE NE+    NS    LK+ LS Q +L    DD W
Sbjct: 237 VDLLAKGIVEAARKEKNENVMAKNSPQDALKEVLSGQRYLLV-LDDVW 283


>01_01_0417 -
           3135502-3135672,3135759-3135947,3136037-3136154,
           3136398-3137048,3137146-3137309,3138598-3139098
          Length = 597

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 86  DPSRINSDIQHLKDWLSKQPHLRARTDDQWL----LAFLRGCKYSLE 214
           +P R+N   QH++  LS    + A T D W     L    GC Y  +
Sbjct: 397 EPLRVNVLFQHIQKMLSANSAVIAETGDSWFNCQKLKLPEGCGYEFQ 443


>01_07_0007 +
           40378472-40378636,40378726-40378858,40378941-40379111,
           40379295-40379373,40379477-40379590,40379664-40379730,
           40379819-40379924,40380009-40380067,40380258-40380367,
           40380455-40380588,40380717-40380802,40380930-40381019,
           40381104-40381283
          Length = 497

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +2

Query: 455 IMMEDDNAIVAGILSILDLDTVKMGHFLQMTPMVMKKMVVASQLYV 592
           +++ D NA++ GIL+  D+ T  +   L++    + K++  + L+V
Sbjct: 39  VLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFV 84


>10_08_0911 -
           21499196-21499236,21499368-21499488,21499665-21499789,
           21500187-21500418,21500488-21500668,21501342-21501438,
           21501641-21501779,21502024-21502351,21502890-21503137,
           21503270-21503543,21504200-21504291,21504451-21504521,
           21505091-21505181,21506526-21507380,21507482-21507594,
           21508007-21508074,21508655-21508835,21509084-21509186,
           21509273-21509379,21510046-21511584,21511661-21511771,
           21511856-21511908,21511988-21512063,21512147-21512366,
           21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 56  AEKARKELNEDPSRINSDIQHLK 124
           ++  R E+ EDPSRI   ++H++
Sbjct: 162 SQSTRSEMAEDPSRIQPQLEHIR 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,161
Number of Sequences: 37544
Number of extensions: 338009
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)