Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22f
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 31   0.81 
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             29   3.3  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)                 29   3.3  
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   5.7  
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 27   9.9  

>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +2

Query: 11  KTSVTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLR-ARTDDQWLLAF 187
           KTS+  S+  +P + +E + + +  DPS    D++ +  W      +      ++ L+A 
Sbjct: 303 KTSLKKSLFGIPFDPSEVSTEGIEVDPSTFEVDVEQVSRWQRLSDEIEPGSQSERALVAM 362

Query: 188 LRGCKYSLERTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPR 367
           +     SL   KE+             +   + S  L D    L     L K+A  D  +
Sbjct: 363 IVENLRSLLINKEEQAKPVGEEDLLSRIEREEVSEALEDAFKELS----LEKSAVQDDAK 418

Query: 368 VSLIIPGRYDADKYNITDVMAVS 436
           V+   P + + D   +TD + VS
Sbjct: 419 VTPSTPQQDEEDGSKLTDRIQVS 441


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
 Frame = +2

Query: 2   IRWKTSVTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQWLL 181
           IR ++ +  ++  L    A   +   +ED  +   D + L+  L  +     R +DQ+++
Sbjct: 387 IRIQSVIDEAIEKLQQSAARADQDNDDEDDMKAQEDQELLEALLESKEQNNGRYEDQYII 446

Query: 182 AFLRGCKYSLERTKEK--LDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATS 355
            F R   +S+    +   LD Y      A ELF+ +      DE       L +P+   S
Sbjct: 447 RFYREKLHSMPCQNQGFILDGYPKTYEQAKELFAAEEGEEAEDESPLAYDKLTMPEVVVS 506


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  KTSVTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDW 130
           KTS+  S+  LP +  E + + +  DPS    DI  +K+W
Sbjct: 372 KTSLKKSLLGLPFDPREVSTEGIEVDPSTFEVDIDQVKNW 411


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +2

Query: 242  YSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPRVSLIIPGR 391
            Y V    P  F+  P NPL  +I S+G I  LP    S      L IPGR
Sbjct: 1420 YWVPDAGPSGFTSIPENPL-GQIASIGRISNLPLVGLSQQLTPPLKIPGR 1468


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 396 SYRPGMIRLTRGESE---VAVLGNINIAPKLNISSNNGLLGFILNNSGAVV 253
           +Y  G++  T G+     + +L N+N+A  L++ SN G +G  L    A +
Sbjct: 456 NYTQGILEATDGQGPDVILEMLANVNLAKDLDLVSNGGRIGDELKEMSAAM 506


>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 367

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 327 IAPKLNISSNNGLLGFILNNSGAVVRTE*YKSNFSFVLSKLYLHPRRN 184
           I+ KL +   +GLLG++L + G +     Y +    VL+K+  H  ++
Sbjct: 274 ISDKLKVDPYSGLLGYVLMDCGVIFTAFFYYNVRKMVLTKICHHDAKD 321


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 41  LPPELAEKARKELNEDPSRINSDIQHL--KDWLSKQPHLRARTDDQWLLAFLR 193
           LP  +A  A KE  +  + +  +   L   DW     H+  RT D+ +L FLR
Sbjct: 715 LPKSMAATATKEWTDQETLLLLEGMELFKDDWNKVAEHVGTRTQDECILHFLR 767


>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
          Length = 1366

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 11  KTSVTMSVRALPPELAEKARKELNEDPSRINSDIQHLKDW-LSKQPHLRARTDD 169
           KTS+  S+  L  +  E++ + +  DPSR   D++ ++ W  S +    +++DD
Sbjct: 374 KTSLKKSLLGLRFDPQEESTEGIEVDPSRFEVDVEQVRPWQKSDETESVSQSDD 427


>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 173 WLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELF 274
           W+ +F     Y L+  KEK DL+Y + + A   F
Sbjct: 113 WITSFSWDEVYGLDNCKEKFDLFYQILSDAINQF 146


>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 173 WLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELF 274
           W+ +F     Y L+  KEK DL+Y + + A   F
Sbjct: 154 WITSFSWDEVYCLDNCKEKFDLFYQILSDAINQF 187


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 496 QNAGHYCVVVFHHNNLL 446
           QN  HY ++++HHN L+
Sbjct: 12  QNRNHYGIMMYHHNRLI 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,084,927
Number of Sequences: 59808
Number of extensions: 401446
Number of successful extensions: 1032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)