Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g22f
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical...    29   2.8  
Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical
           protein C08F1.1 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 315 LNISSNNGLLGFILNNSGAVVRTE*YKSNFSFVLSKLYLHPRR 187
           ++I +NNG    +LN    ++  E +    S+ LS +Y H  R
Sbjct: 308 ISIKNNNGFASLMLNCENELIEKERWAIQASYQLSLVYCHGNR 350


>Z80220-6|CAB02305.1|  282|Caenorhabditis elegans Hypothetical
           protein T08G11.2 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 215 RTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATS 355
           RT  K + +YS+RTT  + F +    P   +  SL  +++  KT+ +
Sbjct: 218 RTTTKKNRHYSIRTTCDQQFFVDCGYPNVRKHYSLSHLVMFYKTSAT 264


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 56  AEKARK-ELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQ 172
           A+K  +  L E+ SRI  DI+  KD+L +  H++   + +
Sbjct: 267 ADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHMEKE 306


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 56  AEKARK-ELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQ 172
           A+K  +  L E+ SRI  DI+  KD+L +  H++   + +
Sbjct: 267 ADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHMEKE 306


>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 188 LRGCKYSLERTKEKL-DLYYSVRT 256
           +  CK SL R KEKL +L YS RT
Sbjct: 277 INSCKTSLRRIKEKLNNLKYSART 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,978
Number of Sequences: 27780
Number of extensions: 311308
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)