Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g19r
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   6.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   8.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    20   8.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    20   8.7  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 340 DDRGQYEQKSELHLA 384
           D +GQY+++ E H+A
Sbjct: 108 DPQGQYKKRYEEHVA 122


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 146 GKWERHSSRLSA 111
           G WERH+  + A
Sbjct: 153 GNWERHTKGIGA 164


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 233 TEKLRNSLSFEAXVPMLKTRALLVELGSATSLVDTATTAVNTNKR 367
           T K    L  E       TRA  +E+ SA  L +T       N+R
Sbjct: 261 TNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRR 305


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 233 TEKLRNSLSFEAXVPMLKTRALLVELGSATSLVDTATTAVNTNKR 367
           T K    L  E       TRA  +E+ SA  L +T       N+R
Sbjct: 50  TNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRR 94


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 233 TEKLRNSLSFEAXVPMLKTRALLVELGSATSLVDTATTAVNTNKR 367
           T K    L  E       TRA  +E+ SA  L +T       N+R
Sbjct: 50  TNKQLTELEKEFHFNKYLTRARRIEIASALQLNETQVKIWFQNRR 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,319
Number of Sequences: 336
Number of extensions: 1682
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)