Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g19r
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)                 29   2.2  
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)                    27   6.6  
SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)          27   8.7  
SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)          27   8.7  

>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
          Length = 334

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 245 RNSLSFEAXVPMLKTRALLVELGSATSLVDTATTAVNTNKRANFILQN 388
           +N   F+A +P L    L   +G+  SLV    T     +R+N++L N
Sbjct: 15  KNEGVFKAAIPCLTVLGLWAIIGNTISLVVLLKTKSLRRRRSNYLLVN 62


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 281 LKTRALLVELGSATSLVDTATTAVNTNKRANFILQNRSELKFRLKS 418
           L TRA +V L  +T+++  ATT V  +K  + ++    ELK +++S
Sbjct: 625 LATRAPIVSLSKSTNIISKATTFVAVDKSTHEVIA-VPELKAQVES 669


>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
          Length = 472

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 157 HPSPASGSVTVRDCPRCGG-RCRL 89
           H S    S  VR C +CGG RCR+
Sbjct: 422 HSSLKEDSTQVRGCEKCGGKRCRV 445


>SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 190 VYSTQQYA--HQGHPSPASGSVTV 125
           +Y TQ YA  H G P  ASG +T+
Sbjct: 30  IYPTQSYAWLHNGKPLNASGRITI 53


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 7    SAEASPNLYIKVKSSAR*VYEPKSDGVPADTAPHNADSR 123
            SA+ASP++ +  +     ++ P S  +P+  AP N ++R
Sbjct: 1020 SADASPSITLTRRRKVAELWRPVSLMLPSQLAPENGNAR 1058


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 262
           DA   R    + RILLG+VY  ST C+     R+ E L+ N+ SF
Sbjct: 836 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 879


>SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)
          Length = 302

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 262
           DA   R    + RILLG+VY  ST C+     R+ E L+ N+ SF
Sbjct: 104 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 147


>SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 262
           DA   R    + RILLG+VY  ST C+     R+ E L+ N+ SF
Sbjct: 213 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 256


>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
          Length = 731

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 262
           DA   R    + RILLG+VY  ST C+     R+ E L+ N+ SF
Sbjct: 487 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,392,910
Number of Sequences: 59808
Number of extensions: 252542
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)