Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g18r
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    29   0.55 
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    28   1.3  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    27   1.7  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    27   2.2  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.8  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   5.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.1  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   5.1  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    26   5.1  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   6.7  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   6.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.9  
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    25   8.9  

>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 218 GLLVVPFASCRSIHLL*QLPFYRRYHRLLESNXXXXXPYRLQIQVRLHTFYNQIILNP 391
           G+L+ PF +  S+++      + R HR L S         L+  + L   Y+Q+ L P
Sbjct: 23  GILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLP 80


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 239 QKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 111
           +KE+L N++  L+K++    E +    +AIR  +  +SD  +P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 105 NWTSIVIVFEGLRIFLQNKEEYKIYI 28
           ++ + V +FEG+++ L  KE+Y+ Y+
Sbjct: 95  DFPTAVRIFEGIKVKLPTKEQYQAYV 120


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 230 QLANLKGHLN-KEIAFHQEQIKRHEDAIRRHKEQMS 126
           QL NLK  L  KE+ F +EQI+        H+++ S
Sbjct: 63  QLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNS 98


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 275 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 117
           E  +E E  +K ++E ++ +        A  Q + +R+ED   +  EQM D++
Sbjct: 193 ENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQMEDLQ 245


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 206 LNKEIAFHQEQIKRHEDAIRRHKEQMSDI 120
           +N+E  F  E+ KR +D+ R+H   +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
 Frame = -2

Query: 278 MEAARED-EYFYKKQKEQLANLKGHLN---KEIAFHQEQIKRHEDAIRRHKE-QMSDIEK 114
           +EAA+   E   +  KE  A+LK  +N   KE++  + Q+K   + +R + E ++SD+ +
Sbjct: 326 LEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISDMSE 385



 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 272  AAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKR-HEDAIRRH-KEQMSDIEK 114
            A+ + E   K+Q EQL + K    KE+A  + +++    +A+    K ++S++EK
Sbjct: 1474 ASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEK 1528


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 263 EDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 123
           E   + + ++EQL N K  + K    H E++   + AI++   QM++
Sbjct: 283 ETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTN 329


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 185 HQEQIKRHEDAIRRHKEQMSDIE 117
           H+E+IK  E+ +   K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 604 VAICIPHLNHICNFSSYLKKKQPSFKIYIIDSEKLFEM 491
           + IC+ +L    N  +Y  +K P F  Y++D+  LF++
Sbjct: 204 LGICLLNLIFARNPFTYPHEKDPIFADYMLDAMTLFDV 241


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = -2

Query: 281 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 114
           K EA +  +  Y   K+Q +NL G ++   +   E++K+    + ++++++ ++EK
Sbjct: 61  KEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELEK 116


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 281 KMEAAREDEYFYKKQKEQLANLK 213
           K+EA ++ E  YK + ++LANL+
Sbjct: 374 KLEAKKQKEKVYKDKLDELANLE 396


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 275 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMS 126
           E  R +E  +++ +++L   +  LNK++     QIK+ E  I R K   S
Sbjct: 327 EQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQIELEIERLKAATS 376


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 275 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQI 171
           E+    E FY+K  E+    K H  +E+ F +E I
Sbjct: 180 ESVLYSEEFYEKSDEEEDEEKSHSAEELEFGEEDI 214


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 209  HLNKEIAFHQEQIKRHEDAIRRHKEQM 129
            HLN E++ H+   K+H +    +K+Q+
Sbjct: 1022 HLNNELSSHRNAEKQHLEKENDYKQQL 1048


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 287 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 150
           F   E A+ED + ++ + EQL  LK    + +  H+E++   E  +
Sbjct: 41  FESREKAKEDFFVHQHEIEQLRKLK----ESLKLHREELDELESRV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,063
Number of Sequences: 5004
Number of extensions: 40631
Number of successful extensions: 103
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)