Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g18f
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 29 0.59
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.4
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 2.4
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.2
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 3.2
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 26 4.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.2
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 5.5
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 5.5
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 26 5.5
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 5.5
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 7.3
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 7.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.7
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 25 9.7
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 407 GLLVVPFASCRSIHLL*QLPFYRRYHRLLESNXXXXHPYRLQIQVRLHTFYNQIILNP 234
G+L+ PF + S+++ + R HR L S L+ + L Y+Q+ L P
Sbjct: 23 GILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLP 80
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 386 QKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 514
+KE+L N++ L+K++ E + +AIR + +SD +P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 395 QLANLKGHLN-KEIAFHQEQIKRHEDAIRRHKEQMS 499
QL NLK L KE+ F +EQI+ H+++ S
Sbjct: 63 QLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNS 98
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 508
E +E E +K ++E ++ + A Q + +R+ED + EQM D++
Sbjct: 193 ENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQMEDLQ 245
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 419 LNKEIAFHQEQIKRHEDAIRRHKEQMSDI 505
+N+E F E+ KR +D+ R+H +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 520 NWTSIVIVFEGLRIFLQNKEEYKIY 594
++ + V +FEG+++ L KE+Y+ Y
Sbjct: 95 DFPTAVRIFEGIKVKLPTKEQYQAY 119
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 347 MEAARED-EYFYKKQKEQLANLKGHLN---KEIAFHQEQIKRHEDAIRRHKE-QMSDIEK 511
+EAA+ E + KE A+LK +N KE++ + Q+K + +R + E ++SD+ +
Sbjct: 326 LEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISDMSE 385
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 353 AAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKR-HEDAIRRH-KEQMSDIEK 511
A+ + E K+Q EQL + K KE+A + +++ +A+ K ++S++EK
Sbjct: 1474 ASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEK 1528
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 362 EDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 502
E + + ++EQL N K + K H E++ + AI++ QM++
Sbjct: 283 ETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTN 329
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 440 HQEQIKRHEDAIRRHKEQMSDIE 508
H+E+IK E+ + K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 21 VAICIPHLNHICNFSSYLKKKQPSFKIYIIDSEKLFEM 134
+ IC+ +L N +Y +K P F Y++D+ LF++
Sbjct: 204 LGICLLNLIFARNPFTYPHEKDPIFADYMLDAMTLFDV 241
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +2
Query: 344 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 511
K EA + + Y K+Q +NL G ++ + E++K+ + ++++++ ++EK
Sbjct: 61 KEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELEK 116
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 344 KMEAAREDEYFYKKQKEQLANLK 412
K+EA ++ E YK + ++LANL+
Sbjct: 374 KLEAKKQKEKVYKDKLDELANLE 396
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 350 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMS 499
E R +E +++ +++L + LNK++ QIK+ E I R K S
Sbjct: 327 EQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQIELEIERLKAATS 376
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 350 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQI 454
E+ E FY+K E+ K H +E+ F +E I
Sbjct: 180 ESVLYSEEFYEKSDEEEDEEKSHSAEELEFGEEDI 214
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 416 HLNKEIAFHQEQIKRHEDAIRRHKEQM 496
HLN E++ H+ K+H + +K+Q+
Sbjct: 1022 HLNNELSSHRNAEKQHLEKENDYKQQL 1048
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 338 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 475
F E A+ED + ++ + EQL LK + + H+E++ E +
Sbjct: 41 FESREKAKEDFFVHQHEIEQLRKLK----ESLKLHREELDELESRV 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,042
Number of Sequences: 5004
Number of extensions: 41781
Number of successful extensions: 106
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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