Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g18f
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153...    30   1.4  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    30   1.4  
02_01_0652 - 4848174-4848194,4849121-4849693,4849816-4849955,485...    29   2.5  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     29   3.3  

>03_01_0192 -
           1534013-1535147,1535249-1535370,1535497-1535556,
           1535666-1535764,1535839-1535889,1535974-1536175,
           1536709-1536911,1537264-1537350,1537435-1537589,
           1537640-1537723,1538121-1538325,1538497-1538724
          Length = 876

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = +2

Query: 344 KMEAAREDEYFYKKQKEQLA--NLKGHLNKEIAFHQEQIKRHEDA-IRRHKEQMSDIEKP 514
           ++EA   +E   ++++   A  +LK  L+K  A  QE+IKR  +A +R+ +EQ   I K 
Sbjct: 328 ELEAQLSEERDLRREERDKAAEDLKSALHKVNAEAQEEIKRQAEAHLRQQREQKEVISKL 387

Query: 515 Q 517
           Q
Sbjct: 388 Q 388


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 368  EYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 475
            E  + +QKE++   K  LNK  + H  +IK HE+ +
Sbjct: 1546 EETFARQKEEIQETKRELNKIRSRHMTEIKAHEEKL 1581


>02_01_0652 -
           4848174-4848194,4849121-4849693,4849816-4849955,
           4850072-4850359,4850458-4850505,4850605-4851106,
           4851217-4851326,4851620-4851916,4852025-4852124
          Length = 692

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 36  PHLNHICNFSSYLKKKQPSFKIYIIDSEKLFEMIY**LFTLKFLNHICAKLRKANNMFL 212
           PHL     ++ +L++ + S + YI+   K F + Y     + FL ++ AKL+K+N   +
Sbjct: 162 PHLWVNVEYALFLQEHKLSAEDYILGLPKDFSVAYISSPEIGFLKNVGAKLKKSNTKLI 220


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 506 QCQTFVLCDA*SHPHVV*SAPGGRQSPCSSAPSGLLVVPFAS 381
           QC+   LC   +   +  SAP     P SSAPSG +  PFAS
Sbjct: 85  QCRALELCFNVALNRLPTSAPHS-PPPSSSAPSGAVAPPFAS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,862
Number of Sequences: 37544
Number of extensions: 227300
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)