Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g18f
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   2e-12
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            32   0.36 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              30   1.9  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)                       29   2.5  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 28   7.7  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = +2

Query: 338 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 517
           FGKME A E++YF + Q +QLA LK H    IA H+++I+ HE+AIRRHKE +   EK  
Sbjct: 80  FGKMEQAHEEQYFRQMQAQQLAALKEHQEHLIATHKQEIEHHEEAIRRHKEALKSYEKKD 139

Query: 518 *TG 526
            +G
Sbjct: 140 GSG 142


>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 344 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIR 478
           K   A E E   K+Q ++L  + G L  E+A   + IK+ ++AIR
Sbjct: 349 KRRLAAETEEALKEQDDRLGKILGKLQLEVARRDDIIKKQDEAIR 393


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 338  FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 508
            F +++ A+ D   Y+ +KE+          E+   Q+Q ++ ED ++  K+++SD+E
Sbjct: 1595 FDELDGAKRDRDKYQLEKEEAEKRLQSYEDELNEKQKQKEKAEDNLKALKKRISDLE 1651


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 477 LIASSCRLICSWWKAISLFKCPFRFAS 397
           LI + C  +C+W KA+S  +  FR AS
Sbjct: 124 LITAVCLCLCAWVKAVSFSRLEFRAAS 150


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 386  QKEQLANLKGHLNKEIAFHQEQ----IKRHEDAIRRHKEQM 496
            Q E    LK HL +++A HQE+     ++HE  +   KEQM
Sbjct: 926  QYEGALQLKEHLKRQLASHQEKSTRYTRQHEKKVAALKEQM 966


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 380 KKQKE-QLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 511
           K+Q E ++  LK HL KE   HQ  ++R +   + HK+ +++I K
Sbjct: 689 KQQYESEIQGLKDHLAKESQRHQADVRRRD---QEHKKDITNIHK 730


>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
          Length = 1080

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 341 GKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 475
           G +E    D   Y KQ+ +L  LK HL   I FHQ+  K   + I
Sbjct: 188 GLLEERGVDGSSYSKQRLKLC-LKHHLEDRITFHQQPSKNKPEII 231


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/49 (24%), Positives = 30/49 (61%)
 Frame = +2

Query: 350 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQM 496
           E+ RE+    +K+KE+L ++K  L +++   Q +I   ++ + +++E +
Sbjct: 452 ESYREELMNERKEKERLLSIKDKLRRDLDSTQSRISSLQEQVYKYREHI 500


>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 344 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 511
           K+    E++ F +K  E LA  K +L KE+   +E  +  +      K Q++DIE+
Sbjct: 223 KLSRLEEEKDFLQKMVETLAIAKENLTKEVEGLKESNQLMQKDSADAKSQLNDIEE 278


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 344  KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 502
            K  +  EDE+  K+ KE+    K H     A H+++ K+H+   ++ K++ SD
Sbjct: 1174 KALSGEEDEWVEKEGKEKKKKHKKHKKHGSAKHKKKDKKHKK--QKEKQKTSD 1224


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 365  DEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 511
            D   + K+ ++L+    HL K++   +  + ++EDA+   ++ + DIEK
Sbjct: 2537 DAQDFNKRYDKLSAGIDHLKKKVEDTKAAVDKYEDALSPVQKALDDIEK 2585


>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 338 FGKMEAAREDEYFYKKQKEQ-LANLK-GHLNKEIAFHQEQIKRHEDAIRRHKEQM 496
           FG+    ++ EYF    K+  L N + G   KEI  H +Q K H +   R  E M
Sbjct: 63  FGQSLVTKDLEYFESLYKQNTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAM 117


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 344 KMEAAREDEYFYKKQKEQL-ANLKGHLNKE-IAFHQEQIKRHE-DAIRRHKEQMSDIEKP 514
           ++E  R++E   +KQ++QL    +  L +E I    E+ KR E +   R K+Q  D+EK 
Sbjct: 145 ELEEKRKEEEEKEKQRKQLEVEKQKRLEEERIRSQNEERKRREREQKEREKQQKLDMEKE 204

Query: 515 Q 517
           +
Sbjct: 205 E 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,459
Number of Sequences: 59808
Number of extensions: 283215
Number of successful extensions: 772
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)