Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g15r
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    33   0.13 
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    33   0.13 
At5g24200.1 68418.m02847 expressed protein ; expression supporte...    31   0.53 
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    31   0.71 
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    30   1.6  
At1g16590.1 68414.m01987 mitotic spindle checkpoint protein, put...    29   2.2  
At3g05680.1 68416.m00634 expressed protein                             29   2.8  
At4g25410.1 68417.m03655 basix helix-loop-helix (bHLH) family pr...    28   5.0  
At5g13250.1 68418.m01522 hypothetical protein                          28   6.6  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    27   8.7  

>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 372 TICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVDIPSGFIRPGHY 193
           TI T GY ++  +  +  SG    ++++D +  QVG     S+ GC   I +G  R   Y
Sbjct: 222 TIVTPGYIESELTQGKYFSGEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRY 281

Query: 192 L---DWFK 178
           +    WFK
Sbjct: 282 VTEPSWFK 289


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 372 TICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVDIPSGFIRPGHY 193
           TI T GY ++  +  +  SG    ++++D +  QVG     S+ GC   I +G  R   Y
Sbjct: 222 TIVTPGYIESELTQGKYFSGEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRY 281

Query: 192 L---DWFK 178
           +    WFK
Sbjct: 282 VTEPSWFK 289


>At5g24200.1 68418.m02847 expressed protein ; expression supported
           by MPSS
          Length = 342

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 505 CRQRMGPYLDRRLIAGELELGVLER----NIESALYGGLQLQSDHSALHHLH 362
           C + +G Y + R    EL+LG +ER    +I   L+GG +  S +S+  HLH
Sbjct: 252 CSEYIG-YFNHRGDMNELQLGRIERLARYSIRRILFGGGESSSSYSSEEHLH 302


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1261

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 420  LRCMVAYNFSPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDE 289
            ++C  +  +S T    ++CT  Y+D T +T  G S G +T + E
Sbjct: 1133 VKCGFSLIYSHTNVDHSLCTDNYSDVTTTTSGGTSSGSITDVGE 1176


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +1

Query: 292 IDHCQRTTA--VTLTSGL---RSVVVAKRANGGGLNGRTEVVGHHTTQIRYSVQEHPVQV 456
           IDH  RTTA    + SG+   RS +  +R N G    RT+ VG HT     S       +
Sbjct: 306 IDH-SRTTARESVMPSGVEKNRSYLNRQRGNRGSQYARTQQVGGHTKASALSNIIPSFNL 364

Query: 457 LRR*ASGPGTAPSAGDKSDIVVITILIRGSLQS-DW 561
           L      PG  P     SDI+   +LI G+ Q+ +W
Sbjct: 365 L----GIPGEKPFPVMTSDILDQPVLIAGASQNKEW 396


>At1g16590.1 68414.m01987 mitotic spindle checkpoint protein,
           putative similar to Mad2B protein [Homo sapiens]
           gi|4835900|gb|AAD30290
          Length = 215

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 666 YINHPEYSENLNVVQPHDIGXID 598
           Y+ HP  SE LN+V P D+   D
Sbjct: 192 YLEHPSLSEPLNLVNPEDVAPHD 214


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 375  STICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSF 253
            ST+ + GYN     T +    GP T+  + G ++  G+TS+
Sbjct: 1828 STVQSFGYNHAGVGTTEQQQSGP-TIDHQSGNLSVTGMTSY 1867


>At4g25410.1 68417.m03655 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 221

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 143 AHQKHPRQRKRLVQQKHPTRQRRPTLRTCFFNINIHKPFDFL 18
           AH+    ++K+ +  +   RQRR  + T F  +  H P  ++
Sbjct: 33  AHETDDNKKKKKLLHRDIERQRRQEMATLFATLRTHLPLKYI 74


>At5g13250.1 68418.m01522 hypothetical protein 
          Length = 286

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 221 GISTWQPSLDTNEVTPTCVIWPSSSITVRGPPLSP 325
           G S++QP L  N+  P  V  PSSS+ V  PP  P
Sbjct: 239 GRSSFQPQLIGND-NPDGVAGPSSSLRVIDPPRRP 272


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 12  IHQKVKWFMNINIKKAGSKCRSPL--TCRVLLLYQALPLSRVLLVCSVSNR 158
           +H+K+ W + INI    SK    L   C+  +++Q    S+VLL   +S R
Sbjct: 590 LHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVR 640


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,245
Number of Sequences: 28952
Number of extensions: 317944
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)