Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g11r
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 34 0.083
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 32 0.33
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.33
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 30 1.4
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 1.8
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 29 2.4
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 29 2.4
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 2.4
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 2.4
At4g01985.1 68417.m00265 expressed protein 29 4.1
At1g76010.1 68414.m08825 expressed protein 29 4.1
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 4.1
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 5.5
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 7.2
At1g32730.1 68414.m04036 expressed protein 28 7.2
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 9.5
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ... 27 9.5
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c... 27 9.5
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 27 9.5
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 27 9.5
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 34.3 bits (75), Expect = 0.083
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -1
Query: 334 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 161
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 160 SNVERRLAQKHMVDWIVSN 104
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 332 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 207
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 601 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 476
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 158 ERGAPSRPEAHGRLD-SEQRDQGDHSGPGEAGPG 60
E G S E H +D +E + G HSGP +GPG
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -1
Query: 358 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 179
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 178 DYQLEKSNVERRL 140
QLE V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -3
Query: 269 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 90
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 89 HSGPGEAGPGPLHRGPGFAG 30
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -3
Query: 269 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 90
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 89 HSGPGEAGPGPLHRGPGFAG 30
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -3
Query: 182 SGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPG 39
SG+P + G P G L + G GP GP P GPG
Sbjct: 185 SGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 344 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 213
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/101 (27%), Positives = 34/101 (33%)
Frame = -3
Query: 332 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 153
GG+ RGR+ G A G G G G G + G A+ G+ R
Sbjct: 104 GGKGRGRKGGGGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGR 163
Query: 152 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAG 30
G S A G + G G AG G G G G
Sbjct: 164 GGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVG 204
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.7 bits (61), Expect = 4.1
Identities = 38/121 (31%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Frame = -3
Query: 338 STGGRNRGREDG---AVARAGTGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAAS 180
S GGR RGR G R G G + E E R GR +G R RG
Sbjct: 147 SPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWEREQSYGRGRGRGRGRSSRGRGRG 206
Query: 179 GLPAREVERGAPSRPEAHGRLDSEQR---DQGDHSGP--GEAG-PGPLHRGPGFAGQEVN 18
G E AP E R D+G + P G G GP RG G+ G +
Sbjct: 207 GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRG-GYDGPQGR 265
Query: 17 R 15
R
Sbjct: 266 R 266
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.7 bits (61), Expect = 4.1
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -1
Query: 391 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 212
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 211 MYAYSEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 56
S V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 334 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 182
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 7.2
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = -1
Query: 394 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 221
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 220 ERL---MYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 50
+L + +E ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 49 ADLASLARK 23
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -1
Query: 415 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 236
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 235 EAAYRERLMYAYSEVKR 185
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 340 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 242
+A IEG E+ QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415
>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
thaliana]; contains Pfam PF00046: Homeobox domain and
Pfam PF01852: START domain
Length = 682
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +2
Query: 548 RHTSFRVEELEPFFR 592
RHTS++++ELE FF+
Sbjct: 63 RHTSYQIQELESFFK 77
>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
domain-containing protein contains Pfam profile PF02409:
O-methyltransferase N-terminus
Length = 344
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 101 HVAHYPVDHVLLGETALHVRLLELVVQT 184
HV H P+ H+ GET H+R L +QT
Sbjct: 66 HVIHDPLAHLFAGET--HLRNLHTKIQT 91
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 263 QEGERAPA-ARGRLQGEAHVRLLRGEAASGLPARE-VERGAPSRPEAHGR 120
Q ERA AR R EAH ++ R ARE ER A R A R
Sbjct: 132 QAVERATREARERAATEAHAKVQRAAVGKATDARERAERAAVQRAHAEAR 181
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 527 HTKSVRTRHTSFRVEELEPFFR 592
H K RHT ++ E+E FFR
Sbjct: 67 HKKKKYNRHTQLQISEMEAFFR 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,732,958
Number of Sequences: 28952
Number of extensions: 328883
Number of successful extensions: 1211
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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