Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g11f
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   3.8  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   3.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 393 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 292
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 289 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 459
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 136 RLVLCTRSVCSHLNAKPRATTL 71
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 73   MLSRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEP 207
            +L    L  GA ++T      A   A  +A  D ++ ARP RG P
Sbjct: 984  LLQEEPLGRGARRRTPVVYDEAVRDAQWMAEMDMESEARPTRGRP 1028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,413
Number of Sequences: 5004
Number of extensions: 48805
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)