Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g11f
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)          47   8e-06
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                29   2.2  
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              29   2.9  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            28   5.1  
SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)              28   5.1  
SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   6.8  

>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
          Length = 185

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 28/80 (35%), Positives = 39/80 (48%)
 Frame = +1

Query: 268 GVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEAT 447
           G  G   F  GLA YL S EI ++  E Y    +    Y    K G  +A  LD   +  
Sbjct: 69  GSLGQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEI 128

Query: 448 ENEWNEGRNQTVKALEDAIE 507
            + +N GRN ++K L+DAI+
Sbjct: 129 LDAFNVGRNASIKHLQDAID 148


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 348 FVLHYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFA 208
           +VL+ IDF A    C  HT  +   H +F+VE    F R   KS F+
Sbjct: 21  YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +3

Query: 69  NNVVARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*TWLYS*RMVP 248
           +  +  G+  R    +   ++   G+R +C N    ++C  C+   R + T  +    +P
Sbjct: 98  DQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFIKIRIP 157

Query: 249 ILPLEN 266
           I PL N
Sbjct: 158 IPPLAN 163


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +RC  TD  H T  T   +R   T P+ LC+
Sbjct: 2   YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   LR   T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 290 YRHHQTDCAHCTDTTRQTVRTVQTPPDRLCA 320



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 322 YRLHQTDCAHCTDFTRQTVRIVQTPPDRLCA 352



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 354 YRHHQTDCAHCTDTTRQTVRIVQTPPDRLCA 384



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 34  YRHHQTDCAHCTDFTRQTVRTVQTSPDRLCA 64



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 66  YRHHQTDCAHCTDLTRQTVRTVQTPPDRLCA 96


>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 416 ANFGPNFT*ATYTMTSSDSPE*YS 345
           ANFGP FT  T+T TS D+ E +S
Sbjct: 89  ANFGPGFT--TFTYTSGDARETFS 110


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 54  IKYTINNVVARGFA-FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           I YT+     R  A +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 14  IVYTVQTSPDRLCALYRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 59



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 349 YRHHQTDCAHCTVTTRQTVRTVQTSPDRLCA 379



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 188
           +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 381 YRFHQTDCAHCTVTTRQTVRSVQTPPDRLCA 411


>SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)
          Length = 116

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 157 HRRRSPVRLVLCT--RSVCSHLNAKPRATTLFIVYF 56
           HRRR P  ++L +  R  C+ +N+K  AT L  +Y+
Sbjct: 58  HRRRRPAAILLQSYWRMYCADINSKSVATWLPHIYY 93


>SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 835

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 294 TKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKGFLVVCCY 157
           TK +   H+  R  +  PFF ++ K +  W T   A+ G++V   Y
Sbjct: 149 TKEINNMHSELR--KSIPFFSSRYKGHGIWDTLMAANLGYMVAFMY 192


>SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
 Frame = +1

Query: 277 GPYTFGVGLATYLCSKEIY--------VMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDK 432
           GP  F +GL  + CS   +        +       GL ++++  +A V   P L AWL  
Sbjct: 276 GPTEFAIGLQVFFCSPATFGTGVILAALAGGNLALGLVIMLITNIAGVFSSPPLLAWL-T 334

Query: 433 EVEATENE 456
            +E T  E
Sbjct: 335 SLETTHEE 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,144,485
Number of Sequences: 59808
Number of extensions: 406691
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)