Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g11f
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu...    32   0.20 
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   5.5  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    27   5.5  
At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase, pu...    27   7.3  
At1g69280.1 68414.m07943 expressed protein                             27   7.3  
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein...    27   9.7  

>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein XTR4
           GI:1244754 from [Arabidopsis thaliana]
          Length = 357

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 223 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 348
           GFI    +Q  FF S   + G YT G+ +A Y  + +++V +H+
Sbjct: 73  GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -1

Query: 276 RHTSFRVEELEPFFR 232
           RHTS++++ELE FF+
Sbjct: 63  RHTSYQIQELESFFK 77


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 297 HTKSVRTRHTSFRVEELEPFFR 232
           H K    RHT  ++ E+E FFR
Sbjct: 67  HKKKKYNRHTQLQISEMEAFFR 88


>At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase XTR9 GI:4218963 from
           [Arabidopsis thaliana]
          Length = 285

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 314 CAARKSM*WSTNITPDCHCWSWCMWLT*NSDQNWLLGWTRK 436
           C +R S+ W+  +T + +  SW MW T NS+Q   L W +K
Sbjct: 223 CCSRTSI-WNW-VTCNANSNSW-MWTTLNSNQLGQLKWVQK 260


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 362 CHCWSWCMWLT*NSDQNWLLGW 427
           C C+SWC W   + D N   GW
Sbjct: 333 CPCFSWCRWP--SCDYNSSCGW 352


>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 348

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 501 CVLQCFHGLVPTFVPFVLGRFNFLVQPSSQ 412
           C++Q   GLVP  V +++G   FL++P+++
Sbjct: 282 CIIQKLSGLVPGSVLYIVG---FLIKPANE 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,724
Number of Sequences: 28952
Number of extensions: 273823
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)