Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g10r
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 281 3e-76
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 37 0.013
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 30 2.0
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 30 2.0
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 29 3.4
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 4.5
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 4.5
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 6.0
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 7.9
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.9
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 7.9
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 7.9
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 7.9
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.9
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 281 bits (690), Expect = 3e-76
Identities = 135/198 (68%), Positives = 156/198 (78%)
Frame = -3
Query: 657 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 478
EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61
Query: 477 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVR 298
KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR
Sbjct: 62 KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121
Query: 297 RYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYA 118
+YV++R LP KEGK K + KAPKIQRLVTPVVLQ K A+YA
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYA 178
Query: 117 KLLAQRKKESKVRRQEEI 64
KLLA+R KE+K +R E++
Sbjct: 179 KLLAKRAKEAKEKRHEQL 196
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 517 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHAL 672
V L Q+ + A+ D L H +SL V+ SD + ++LP I + Y H L
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTL 303
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 302 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 213
Y V + C+ PR K+L P + HLR +G
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 302 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 213
Y V + C+ PR K+L P + HLR +G
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 471 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 331
VR C +D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 651 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 568
E D+ G EW+G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 381 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 283
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -3
Query: 138 SSEAEYAKLLAQRKKESKVRRQEEIK 61
++EAE +L Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 333 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 214
+ F+++KEDD+ Y++ L + K NA ++ P+ R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 160 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 252
L+QSE+ T T NY P++L C GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 232 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 318
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 232 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 318
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 232 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 318
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = -3
Query: 414 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 256
+GA+++P L +G V P + G K R++ +++L E DVR + RV ++
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326
Query: 255 ENAKPRHKAP 226
A P+ P
Sbjct: 327 PPATPQEADP 336
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 232 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 318
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 348 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 238
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,704,763
Number of Sequences: 59808
Number of extensions: 425443
Number of successful extensions: 1299
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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