Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g10f
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.17 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.17 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 294 EWPFDIRRRTRLFVRTPCFI 235
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 294 EWPFDIRRRTRLFVRTPCFI 235
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 RMGAEVEADQLGDEWKGYV 196
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +1

Query: 4  IWSFSWLTFDGIDRSHEVKRFVPGN 78
          +W F W+ F  +    E+K     N
Sbjct: 1  MWHFLWIVFLALANGEEIKTIYSWN 25


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 450  VPNVLPKSVSCSTLAKKMMYV 512
            VP++ P+ V C+ L  + + V
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 450  VPNVLPKSVSCSTLAKKMMYV 512
            VP++ P+ V C+ L  + + V
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQV 1126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,178
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)