Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g10f
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             221   3e-58
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   220   6e-58
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.2  
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    29   2.8  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   2.8  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   4.8  
At4g31240.2 68417.m04435 expressed protein                             27   8.4  
At4g31240.1 68417.m04434 expressed protein                             27   8.4  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   8.4  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  221 bits (540), Expect = 3e-58
 Identities = 108/172 (62%), Positives = 129/172 (75%), Gaps = 4/172 (2%)
 Frame = +2

Query: 50  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 403
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 404 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 553
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  220 bits (537), Expect = 6e-58
 Identities = 109/172 (63%), Positives = 128/172 (74%), Gaps = 4/172 (2%)
 Frame = +2

Query: 50  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 403
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 404 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 553
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GK
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGK 172


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 35  GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 181
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 419 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE 547
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+   K+
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKK 330


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 71  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 238
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 407 EIPGLTDGNVPRRLGPKRASKIRKL 481
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 244 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 143
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 244 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 143
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 317 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNL 490
           G ++    RG +   + S  AL  +  GA   PG       +P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 491 SKEDDVRRYVVKRVLPAKEG 550
             + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,385
Number of Sequences: 28952
Number of extensions: 287404
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)