Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g09r
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04310.1 68414.m00422 ethylene receptor-related similar to et... 29 4.3
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 28 5.6
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont... 28 5.6
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 5.6
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [... 28 7.4
At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.4
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 9.8
At2g45010.2 68415.m05605 expressed protein weak similarity to PG... 27 9.8
At2g45010.1 68415.m05604 expressed protein weak similarity to PG... 27 9.8
>At1g04310.1 68414.m00422 ethylene receptor-related similar to
ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
contains Pfam profiles PF01590: GAF domain, PF00512: His
Kinase A (phosphoacceptor) domain
Length = 645
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 406 PTWLWLMTATSLWRLFML*LPCIWTLEVVTLVP 504
P W W+MTA +++++ + + L +VTL+P
Sbjct: 110 PHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLP 142
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 654 HKSSKMGVSTSVGGRTTHNP 713
HK+ MG STS+ G T+H+P
Sbjct: 294 HKTKDMGNSTSLRGSTSHSP 313
>At4g13560.1 68417.m02113 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein similar to LEA protein [Cicer arietinum]
GI:2909420; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 109
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 527 QKRG*TDEPGHPWTSSSEQRSQSGC 601
Q RG E WT S++Q +QS C
Sbjct: 10 QNRGQAQEKAEQWTESAKQTAQSAC 34
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 572 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 441
WR + + LA+G + GGTRV H + +N LH
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607
>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
[Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
thaliana] GI:6960305
Length = 84
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 572 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 441
WR + + LA+G + GGTRV H + +N LH
Sbjct: 29 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72
>At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 452
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 586 VTERVLVSKEAPQIEVL--PFVSAITSPARW 672
VTER ++K APQIEVL P V S W
Sbjct: 323 VTERGYIAKWAPQIEVLGHPAVGGFWSHCGW 353
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 717 YQDCGWFCRQRWCSPPSCWTCDR 649
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At2g45010.2 68415.m05605 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/39 (25%), Positives = 16/39 (41%)
Frame = +2
Query: 275 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 391
G++ G + + +K+ P CC HW C E
Sbjct: 102 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 140
>At2g45010.1 68415.m05604 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 244
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/39 (25%), Positives = 16/39 (41%)
Frame = +2
Query: 275 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 391
G++ G + + +K+ P CC HW C E
Sbjct: 148 GIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQE 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,903
Number of Sequences: 28952
Number of extensions: 252757
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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