Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g09f
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.4  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.0  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   7.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 360 TLAFGTANIFSGGTRVTTSSVHMHGSYNMNN 452
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 420 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLAS 530
           V  H   +MNNLH  +  ++H      N+   I+  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
 Frame = +3

Query: 198 GSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWR--SRDAQARQFTLAF 371
           G AA   ++    G +  L      I   +LL NT  +T     R     + AR F L F
Sbjct: 352 GHAAVKCSYKANEGQLYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTF 411

Query: 372 ----GTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVA 470
               GT+  FS   RV  S++          +HND+A
Sbjct: 412 TLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLA 448


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 518  QPSQWKQQLCWYLGLGCR 571
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,370
Number of Sequences: 5004
Number of extensions: 34296
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)