Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g08r
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)                 30   0.88 
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)                29   1.5  
SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)                    29   2.0  
SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.2  
SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14)               27   8.2  
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)                27   8.2  
SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7)                    27   8.2  

>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
          Length = 720

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +2

Query: 227 STGRRRVPHVDSLRAGCRSTSHNEAP*QSIIWSNTAD--CQTVCSASRAGVS---HFISR 391
           ST RR+   V  LR+ CR    + A  ++     TAD   ++  SASR+ +S   H +SR
Sbjct: 575 STERRKRRFVSPLRSSCRGRRRDSAH-KATACGRTADQGARSGDSASRSRISAVIHEVSR 633

Query: 392 HGDDR 406
           H D R
Sbjct: 634 HLDTR 638


>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
          Length = 319

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 GACR*TRQGRPSPGSRGVPVRDRPPC 165
           GAC    QGR  PG RGV +RD   C
Sbjct: 104 GACISGIQGRVHPGYRGVHIRDTGAC 129



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 242 GACR*TRQGRPSPGSRGVPVRDRPPCRGR 156
           GAC    Q R  PG RGV +RD   C  R
Sbjct: 127 GACTSGIQERAHPGYRGVHIRDTGACTYR 155



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 242 GACR*TRQGRPSPGSRGVPVRDRPPC 165
           GAC    QGR   G RGV +RD   C
Sbjct: 81  GACTSGIQGRAHTGYRGVHIRDTGAC 106


>SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 479

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 201 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPIA 341
           S  R  LTRL   ++ L +T CE  +  R      N ++ G +LPIA
Sbjct: 260 SNIRGVLTRLQVHSLCLQITKCEFVL--REVEYKGNKITQGGVLPIA 304


>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 183 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 296
           +WD   S A   L   P G+  + L AC+L    R TT
Sbjct: 35  SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72


>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 302 ELRCDSCCDSQLAGCQREVHGA 237
           E+ CDSC DSQ    + EV+G+
Sbjct: 122 EMICDSCMDSQQVITKEEVNGS 143


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 155 PAPDKADGRELGHPYFPGS 211
           P PD AD +E   PYFP S
Sbjct: 353 PLPDSADPKENTKPYFPQS 371


>SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14)
          Length = 322

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 140 RHSPVQKLSTKRISLQCTDL 81
           RH+PV K++  R+S  C DL
Sbjct: 191 RHNPVLKIAGPRVSADCRDL 210


>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
          Length = 635

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 287 SCCDSQLAGCQREVHGACR*TRQGRPSPGSRGV 189
           SC   +L GC R+  G+ R     +PS  SR V
Sbjct: 435 SCATGRLPGCTRKPSGSSRRVFSRKPSGSSRRV 467


>SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7)
          Length = 212

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 142 KLNRPRPRQGGRSXXXXXXXXXXXXXXXVYRQAPC 246
           KL R RPR+ G+S               VYR+ PC
Sbjct: 31  KLRRRRPRRPGQSATEKEKPAPVLGPSDVYRENPC 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,935
Number of Sequences: 59808
Number of extensions: 255049
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)