Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g08r
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom...    29   1.7  
At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ...    28   2.9  
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    28   3.8  
At4g14280.1 68417.m02201 hypothetical protein                          27   6.7  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   8.9  

>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 916

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 123 ETQHEEDITSMY--RFGDAKPHLSSRQTHMHLFVTQWF 16
           +TQ +ED   ++  +FG+A P L    +  HLF   WF
Sbjct: 199 KTQRDEDPLYVFDDKFGEAAPELLKDYSVPHLFQEDWF 236


>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 189

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 221 QGRPSPGSRG---VPVRDRPPCRGRGRFNFRHSP 129
           Q +   G RG   VP R R P RGRG F  R +P
Sbjct: 133 QPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAP 166


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 155 PAPDKADGRELGHPYFPGSD---GPDASTGRRRVPHVDSLRAGCRS 283
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 192 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 320
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 191 VPVRDRPPCRGRGRFNFRHSPV 126
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,304
Number of Sequences: 28952
Number of extensions: 165838
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)