Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g05r
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.6  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    20   8.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -2

Query: 162 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMSKML 43
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 179 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV 307
           +CL +L K  +    L L G     AI S IL+FV    +++V
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVV 185


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 179 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV 307
           +CL +L K  +    L L G     AI S IL+FV    +++V
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVV 185


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 127 TPLTLLFLKFDRDSSHLRVSETP 195
           +P  L + K DRD    R S TP
Sbjct: 82  SPGFLTYTKADRDVDLFRGSSTP 104


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 LHIFFYLYQNQVLILYSI 314
           LH+FF+   N++L  Y +
Sbjct: 118 LHVFFFTLFNKLLGQYPV 135


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 163 DSSHLRVSETPH 198
           D+SH R+SE P+
Sbjct: 302 DTSHNRISEIPN 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,619
Number of Sequences: 336
Number of extensions: 1562
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)