Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g05r
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   142   2e-35
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   140   6e-35
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   1.6  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.6  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   3.7  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   3.7  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   3.7  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   3.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   4.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   6.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   6.4  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   6.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   8.5  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  142 bits (345), Expect = 2e-35
 Identities = 69/106 (65%), Positives = 83/106 (78%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGLXLRAA 4
           ERER+D YVPEVS LE D I VD DTKDM K L +++I  + + A+
Sbjct: 77  ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVVVAAS 122


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  140 bits (340), Expect = 6e-35
 Identities = 67/98 (68%), Positives = 78/98 (79%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNI 28
           ERER+D YVPEVS LE D + VD DTKDM K L ++ I
Sbjct: 77  ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 233 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 343
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 28  NIVEVQHLRHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 177
           NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 372 NIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 180 SQVRGISIKLQEEERERRDNYVPEV 106
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 195 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 103
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 338 FLTVLVRTRPMAEVVQRCF 394
           F T L R  P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 215 PAILFLRGLVGMIAISSHILLFVSK 289
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 61  LGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 165
           L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 175 LNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 156 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNIN 25
           KL E+E+   ++Y  +V  LEH I +   +   ++  L     N
Sbjct: 82  KLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSN 125


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 26  LILLKSSIFDISLVSGSTSMMSCSR 100
           +I L+++ +D++ VS S S +SCS+
Sbjct: 808 VIALEATNYDVNEVSDSDSKLSCSK 832


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 261 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 169
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 116  SQKCLLSNMTS-SK*TPTPRICRRCWTSTILMACXY 12
            S+K L+++  S +  T   RIC +C++    M+C +
Sbjct: 1232 SEKTLVNHCNSCNSTTSNTRICEKCYSLVPRMSCTF 1267


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 156 KLQEEERERRDNYVPEVSALEHDIIEVD 73
           + + +E+ RRD     +  L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 189 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 91
           L++  +     K Q+  ++R D +  EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 GHDPWLKLYSAAFDRIK 407
           G D WLKL+ +AF + +
Sbjct: 146 GDDTWLKLFPSAFSKFE 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,656
Number of Sequences: 5004
Number of extensions: 28748
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)