Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g05r
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            131   2e-31
10_07_0174 + 13815478-13815903                                        130   6e-31
06_01_0889 - 6807449-6809257                                           30   0.88 
03_02_0943 + 12598616-12598789,12599790-12601250                       29   1.5  
03_06_0324 + 33133081-33133260,33133381-33133481,33133665-331337...    28   2.7  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   4.7  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   6.2  
08_01_1057 + 10761508-10761758,10762155-10762267,10762681-107627...    27   6.2  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  131 bits (317), Expect = 2e-31
 Identities = 61/101 (60%), Positives = 81/101 (80%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SALE D I VD +T DM   L   ++ G+
Sbjct: 77  ERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV 117


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  130 bits (313), Expect = 6e-31
 Identities = 60/101 (59%), Positives = 80/101 (79%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VPE SALE + I VD +T +M   L   ++ G+
Sbjct: 77  ERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGV 117


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 189 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 67
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = -2

Query: 219 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLD 40
           A +++HL+RR+        + K Q EE ++  +   + + LEHD+I  + +T D+ K L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>03_06_0324 +
           33133081-33133260,33133381-33133481,33133665-33133797,
           33133936-33134027,33134309-33134408,33134505-33134577,
           33134659-33134779,33135418-33135537,33136089-33136179,
           33136288-33136305
          Length = 342

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 128 VTTMSQKCLLSNMTSS-K*TPTPRICRRCWTSTILMACXYAQ 6
           V  +S+K  L +  SS +  PT R  + CW  T+ + C Y +
Sbjct: 284 VLHLSKKVHLGSPISSIEFCPTERFLKYCWIVTVAIVCLYCR 325


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 183 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 67
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 67  VGVYFDDVMFESRHFWDIVVTPL 135
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


>08_01_1057 +
           10761508-10761758,10762155-10762267,10762681-10762733,
           10763892-10764248
          Length = 257

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/64 (18%), Positives = 37/64 (57%)
 Frame = -2

Query: 210 ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNN 31
           A +L+ +   S+++   ++ + EE++++D  + +   LE D ++ + D+K  + ++  + 
Sbjct: 122 AVYLVAQYARSEIK--RMEAEAEEKKKKDEELEKEKQLEADSVKDETDSKLSAVLVRLDT 179

Query: 30  INGL 19
           + G+
Sbjct: 180 LEGV 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,338
Number of Sequences: 37544
Number of extensions: 170124
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)